Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 621 4e-173
seq29272 114 1e-20
seq98625 113 5e-20
seq29277 102 9e-17
seq83019 100 3e-16
seq83018 89.7 6e-13
seq59708 89.7 6e-13
>seq195423
Length=63734
Score = 621 bits (688), Expect = 4e-173
Identities = 732/988 (74%), Gaps = 2/988 (0%)
Strand=Plus/Minus
Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862
||||| | ||| ||||| || | |||||||| || | |||||||| || || ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921
|||||||| ||| | ||| | |||||| |||| || || |||||||||| ||||||||
Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499
Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439
Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041
|| || |||||||| || |||| |||| || || ||| | || || || || ||
Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379
Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101
|||||||| ||||| | || || ||| | || || || ||||||| | || | ||
Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319
Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161
| |||||| | | || | | || |||||||||||||||||||| || |||
Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259
Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221
||| ||||||||||| ||||| ||||||||| || ||||| || || || || ||||
Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199
Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281
||| ||| | ||||||| ||||||| || ||| || |||| ||||||||| || ||
Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139
Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341
|||||||||||| || | ||| |||||||||| || || ||||| ||||||||||| ||
Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079
Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401
||||||||| | || || ||||| |||||||| || || || ||| ||||||||||||
Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019
Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461
|| |||| || |||||| | |||| || || ||||||| ||| || || ||
Sbjct 1018 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 959
Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521
||||| ||||||||||||||||| ||||| || ||||| || || || || || || ||
Sbjct 958 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 899
Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581
|| ||||||||||||||||| || ||||| || || ||| | || |||||||| ||
Sbjct 898 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 839
Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641
|||||||||||| || || |||||||||||||| | ||| || || ||||| |||||
Sbjct 838 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 779
Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701
| ||||||||||| |||||||| || | | || | ||||| | || | || ||
Sbjct 778 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 719
Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761
||||| || | |||| || ||| || || |||||||| ||||| || ||||| ||
Sbjct 718 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 659
Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCT 160789
||| ||||||||||| ||||| ||||||
Sbjct 658 TCATAACTTCCCTCTAGACCTAGCTGCT 631
Score = 554 bits (614), Expect = 5e-153
Identities = 725/994 (73%), Gaps = 7/994 (1%)
Strand=Plus/Plus
Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604
|| || ||||||||||| || |||||||| || | || ||||| ||| ||| | |||
Sbjct 35982 GACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 36041
Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664
| || |||||| | || ||||| || || | || ||||||||||||||| | ||
Sbjct 36042 TTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCC 36101
Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGC 161723
||||||||| | || || ||||| || | | || || |||||| ||||| ||| |
Sbjct 36102 AGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCCGCAGTTTCGACTCCTGCTAATAG 36160
Query 161724 TATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782
| | | |||||| || || || || ||||||||||| || ||||| ||||| | |
Sbjct 36161 TTTAGCGCATTCT-TTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCT 36219
Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842
|| ||| | || || || |||| |||||| || || ||||| ||||||| || || |
Sbjct 36220 GGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAATAG 36279
Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCT 161901
| |||||| | ||||| |||||||||||||| ||| || | | || ||||| |||||
Sbjct 36280 GTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAAT-TGCGACCTTATAATGCA 36338
Query 161902 ATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGA 161961
|| || ||||||| ||| |||||||||||||| || || || || ||||| || ||
Sbjct 36339 ATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGT 36398
Query 161962 CAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTT 162021
||||| |||||||| ||||| ||||| || || || || || | ||| | |||
Sbjct 36399 CAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTT 36458
Query 162022 TTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGT 162081
|| | ||||| || || |||||||| | || || || || |||||||| || || |||
Sbjct 36459 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGT 36518
Query 162082 ATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTAC 162141
| ||||| | |||| |||| | ||| ||||| || | || || ||||| || | |
Sbjct 36519 GTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTT 36578
Query 162142 CAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACT 162201
|||||||||| ||||| || ||| |||||| || | ||||||| || || ||
Sbjct 36579 GAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACC 36638
Query 162202 TACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAAT 162261
|| |||||||| || || ||||| || ||||| || ||||| || |||||||| |||
Sbjct 36639 TATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAAT 36698
Query 162262 AAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCT 162321
|| |||||||| |||||||||||| | || || || || | ||| | |||| ||| ||
Sbjct 36699 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 36758
Query 162322 ATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATT 162381
| || | | || || || || || || |||||||| ||||| || || ||||| ||
Sbjct 36759 CTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATC 36818
Query 162382 CGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAA 162441
||||||||||| |||||||||||||| || |||||||| || ||||| || || || ||
Sbjct 36819 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAG 36878
Query 162442 GGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAG 162501
||| ||||||| ||| |||| | ||||| || ||||| ||| || |||||||||||
Sbjct 36879 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 36938
Query 162502 GAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535
|| ||||| || | || ||||| || | |||||
Sbjct 36939 GAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 36971
>seq29272
Length=1881
Score = 114 bits (126), Expect = 1e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034
||||| |||||||| ||||| || |||| || ||||| || | ||||| ||||||
Sbjct 1549 CTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGC 1490
Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTG 161094
||| | ||| |||| || ||| | ||| || || || || || || ||| || |||
Sbjct 1489 TCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTG 1430
Query 161095 GATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGAT 161154
|||||||||||| ||| | ||| ||||| || || || | ||||||||| || ||||
Sbjct 1429 GATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGAT 1370
Query 161155 GTAACTAT 161162
|| |||||
Sbjct 1369 GTTACTAT 1362
>seq98625
Length=4366
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 160958 AGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCT 161017
|||| || || || |||| || || ||||| |||||||| || ||| ||||| ||||
Sbjct 1742 AGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCT 1683
Query 161018 GTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAAT 161077
| || |||||||||||||| || |||||||| ||| | | | |||| | || || || |
Sbjct 1682 GCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGT 1623
Query 161078 CTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTG 161137
| ||| || ||||| ||||| ||||| | || | || | | | ||||| ||| ||
Sbjct 1622 CAGATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTT 1563
Query 161138 CTTATCCCACTTCTGAT 161154
| || || ||||| |||
Sbjct 1562 CATACCCGACTTCAGAT 1546
>seq29277
Length=523
Score = 102 bits (112), Expect = 9e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019
||||| |||| | ||||| || ||||| || || || |||| || || || ||
Sbjct 311 GATGACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGC 252
Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079
| |||||| ||||||||||||||||||| || ||| |||| ||| || || ||
Sbjct 251 AGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCAGGTAGTGTTGACCAGTCA 192
Query 161080 GATC-AATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138
||| || ||||| || | ||||||||| | || |||| | ||| || || || |||||
Sbjct 191 GATGGAAGCTTTCTTG-AGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTGTTGC 133
Query 161139 TTATCCCACTTCTGATGTAACTATT 161163
|||||| || |||||| ||| ||
Sbjct 132 TTATCCTACAAGTGATGTTACTGTT 108
>seq83019
Length=2865
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 161007 ACCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTAC 161066
||||||||| ||||| |||||||| ||||||||||||||||| |||| | || |
Sbjct 643 ACCCTACTCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGGCTC 584
Query 161067 TGTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCT 161126
|| || ||||| ||| ||| ||||| |||||| | || | || ||| ||||| ||
Sbjct 583 CGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGAAAGGTTTTGTGCT 524
Query 161127 GACCTGCGTTGCTTATCCCACTTCTGAT 161154
|| |||||||| ||||| || || |||
Sbjct 523 TACATGCGTTGCATATCCTACATCGGAT 496
>seq83018
Length=2165
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032
|||| ||| ||||||| || || || | || |||||||| || || |||||||| |
Sbjct 332 TCCTCGACTCTGCTGAAGATGCCGGAATGGAGCTCCCCTACTCATGCCGCGCTGGTGCCT 273
Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092
|||||||||| ||||| ||| | || |||| || ||||| ||| ||| ||||
Sbjct 272 GCTCTACTTGCGCTGGCCTGATGGTTTCAGGCTCTGTTGACCAATCAGATGGATCATTCC 213
Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCC 161144
| |||||| | || | || ||| | |||||| || ||| |||| |||||
Sbjct 212 TTGATGATAACCAGATGGAGAAAGGTTATGTCCTTACATGCATTGCATATCC 161
>seq59708
Length=5797
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032
|||| ||| ||||||| || || || | || |||||||| || || |||||||| |
Sbjct 5778 TCCTCGACTCTGCTGAAGATGCTGGAATGGAGCTCCCCTACTCATGCCGCGCTGGTGCCT 5719
Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092
|||||||||| ||||| ||| | || |||| || ||||| ||| ||| ||||
Sbjct 5718 GCTCTACTTGCGCTGGCCTGATGGTTTTAGGCTCTGTTGACCAATCAGATGGATCATTCC 5659
Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCC 161144
| |||||| | || | || ||| | |||||| || ||| |||| |||||
Sbjct 5658 TTGATGATAACCAGATGGAGAAAGGTTATGTCCTTACATGCATTGCATATCC 5607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549732293006400
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