Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq195423 621 4e-173 seq29272 114 1e-20 seq98625 113 5e-20 seq29277 102 9e-17 seq83019 100 3e-16 seq83018 89.7 6e-13 seq59708 89.7 6e-13 >seq195423 Length=63734 Score = 621 bits (688), Expect = 4e-173 Identities = 732/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| | ||| ||||| || | |||||||| || | |||||||| || || || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| ||| | ||| | |||||| |||| || || |||||||||| |||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| ||||| | || || ||| | || || || ||||||| | || | || Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | || |||||||||||||||||||| || ||| Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| ||||||||||| ||||| ||||||||| || ||||| || || || || |||| Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||| ||| | ||||||| ||||||| || ||| || |||| ||||||||| || || Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 |||||||||||| || | ||| |||||||||| || || ||||| ||||||||||| || Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 ||||||||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || |||| || |||||| | |||| || || ||||||| ||| || || || Sbjct 1018 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 959 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 ||||| ||||||||||||||||| ||||| || ||||| || || || || || || || Sbjct 958 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 899 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 || ||||||||||||||||| || ||||| || || ||| | || |||||||| || Sbjct 898 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 839 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 |||||||||||| || || |||||||||||||| | ||| || || ||||| ||||| Sbjct 838 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 779 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 | ||||||||||| |||||||| || | | || | ||||| | || | || || Sbjct 778 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 719 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 ||||| || | |||| || ||| || || |||||||| ||||| || ||||| || Sbjct 718 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 659 Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCT 160789 ||| ||||||||||| ||||| |||||| Sbjct 658 TCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 554 bits (614), Expect = 5e-153 Identities = 725/994 (73%), Gaps = 7/994 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || || ||||||||||| || |||||||| || | || ||||| ||| ||| | ||| Sbjct 35982 GACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 36041 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || ||||| || || | || ||||||||||||||| | || Sbjct 36042 TTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCC 36101 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGC 161723 ||||||||| | || || ||||| || | | || || |||||| ||||| ||| | Sbjct 36102 AGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCCGCAGTTTCGACTCCTGCTAATAG 36160 Query 161724 TATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782 | | | |||||| || || || || ||||||||||| || ||||| ||||| | | Sbjct 36161 TTTAGCGCATTCT-TTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCT 36219 Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842 || ||| | || || || |||| |||||| || || ||||| ||||||| || || | Sbjct 36220 GGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAATAG 36279 Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCT 161901 | |||||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| Sbjct 36280 GTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAAT-TGCGACCTTATAATGCA 36338 Query 161902 ATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGA 161961 || || ||||||| ||| |||||||||||||| || || || || ||||| || || Sbjct 36339 ATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGT 36398 Query 161962 CAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTT 162021 ||||| |||||||| ||||| ||||| || || || || || | ||| | ||| Sbjct 36399 CAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTT 36458 Query 162022 TTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGT 162081 || | ||||| || || |||||||| | || || || || |||||||| || || ||| Sbjct 36459 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGT 36518 Query 162082 ATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTAC 162141 | ||||| | |||| |||| | ||| ||||| || | || || ||||| || | | Sbjct 36519 GTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTT 36578 Query 162142 CAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACT 162201 |||||||||| ||||| || ||| |||||| || | ||||||| || || || Sbjct 36579 GAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACC 36638 Query 162202 TACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAAT 162261 || |||||||| || || ||||| || ||||| || ||||| || |||||||| ||| Sbjct 36639 TATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAAT 36698 Query 162262 AAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCT 162321 || |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 36699 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 36758 Query 162322 ATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATT 162381 | || | | || || || || || || |||||||| ||||| || || ||||| || Sbjct 36759 CTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATC 36818 Query 162382 CGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAA 162441 ||||||||||| |||||||||||||| || |||||||| || ||||| || || || || Sbjct 36819 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAG 36878 Query 162442 GGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAG 162501 ||| ||||||| ||| |||| | ||||| || ||||| ||| || ||||||||||| Sbjct 36879 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 36938 Query 162502 GAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 || ||||| || | || ||||| || | ||||| Sbjct 36939 GAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 36971 >seq29272 Length=1881 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034 ||||| |||||||| ||||| || |||| || ||||| || | ||||| |||||| Sbjct 1549 CTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGC 1490 Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTG 161094 ||| | ||| |||| || ||| | ||| || || || || || || ||| || ||| Sbjct 1489 TCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTG 1430 Query 161095 GATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGAT 161154 |||||||||||| ||| | ||| ||||| || || || | ||||||||| || |||| Sbjct 1429 GATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGAT 1370 Query 161155 GTAACTAT 161162 || ||||| Sbjct 1369 GTTACTAT 1362 >seq98625 Length=4366 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 160958 AGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCT 161017 |||| || || || |||| || || ||||| |||||||| || ||| ||||| |||| Sbjct 1742 AGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCT 1683 Query 161018 GTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAAT 161077 | || |||||||||||||| || |||||||| ||| | | | |||| | || || || | Sbjct 1682 GCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGT 1623 Query 161078 CTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTG 161137 | ||| || ||||| ||||| ||||| | || | || | | | ||||| ||| || Sbjct 1622 CAGATGGCTCCTTCCTCGATGAAAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTT 1563 Query 161138 CTTATCCCACTTCTGAT 161154 | || || ||||| ||| Sbjct 1562 CATACCCGACTTCAGAT 1546 >seq29277 Length=523 Score = 102 bits (112), Expect = 9e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 ||||| |||| | ||||| || ||||| || || || |||| || || || || Sbjct 311 GATGACACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGC 252 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||| ||||||||||||||||||| || ||| |||| ||| || || || Sbjct 251 AGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCAGGTAGTGTTGACCAGTCA 192 Query 161080 GATC-AATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 ||| || ||||| || | ||||||||| | || |||| | ||| || || || ||||| Sbjct 191 GATGGAAGCTTTCTTG-AGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTGTTGC 133 Query 161139 TTATCCCACTTCTGATGTAACTATT 161163 |||||| || |||||| ||| || Sbjct 132 TTATCCTACAAGTGATGTTACTGTT 108 >seq83019 Length=2865 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 161007 ACCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTAC 161066 ||||||||| ||||| |||||||| ||||||||||||||||| |||| | || | Sbjct 643 ACCCTACTCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGGCTC 584 Query 161067 TGTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCT 161126 || || ||||| ||| ||| ||||| |||||| | || | || ||| ||||| || Sbjct 583 CGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGAAAGGTTTTGTGCT 524 Query 161127 GACCTGCGTTGCTTATCCCACTTCTGAT 161154 || |||||||| ||||| || || ||| Sbjct 523 TACATGCGTTGCATATCCTACATCGGAT 496 >seq83018 Length=2165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 |||| ||| ||||||| || || || | || |||||||| || || |||||||| | Sbjct 332 TCCTCGACTCTGCTGAAGATGCCGGAATGGAGCTCCCCTACTCATGCCGCGCTGGTGCCT 273 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||||||||| ||||| ||| | || |||| || ||||| ||| ||| |||| Sbjct 272 GCTCTACTTGCGCTGGCCTGATGGTTTCAGGCTCTGTTGACCAATCAGATGGATCATTCC 213 Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCC 161144 | |||||| | || | || ||| | |||||| || ||| |||| ||||| Sbjct 212 TTGATGATAACCAGATGGAGAAAGGTTATGTCCTTACATGCATTGCATATCC 161 >seq59708 Length=5797 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 |||| ||| ||||||| || || || | || |||||||| || || |||||||| | Sbjct 5778 TCCTCGACTCTGCTGAAGATGCTGGAATGGAGCTCCCCTACTCATGCCGCGCTGGTGCCT 5719 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||||||||| ||||| ||| | || |||| || ||||| ||| ||| |||| Sbjct 5718 GCTCTACTTGCGCTGGCCTGATGGTTTTAGGCTCTGTTGACCAATCAGATGGATCATTCC 5659 Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCC 161144 | |||||| | || | || ||| | |||||| || ||| |||| ||||| Sbjct 5658 TTGATGATAACCAGATGGAGAAAGGTTATGTCCTTACATGCATTGCATATCC 5607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549732293006400