Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq195423 715 0.0 seq170570 122 1e-22 seq9524 116 4e-21 seq93305 100 3e-16 >seq195423 Length=63734 Score = 715 bits (792), Expect = 0.0 Identities = 755/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| | ||| ||||| || | || || |||||| | |||||||| ||||| || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| ||| | ||| | ||||| |||| ||||||| || ||| |||||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || |||||||| |||||||| ||| |||| || || | ||||||||||| Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || || |||||||| || ||||| |||| || || ||| | || || ||||| || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||| ||||| ||||||||||| | |||||||| |||||||| | || | || Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | || ||||||||||| |||||||||||| | ||| Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| ||||||||||| || |||||||| || |||| || Sbjct 1258 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1200 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | || ||| | |||| || |||||||||| ||| |||||||||||||| || || | Sbjct 1199 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 |||||||||| ||||| |||||| |||| |||||||| || ||||||||||| ||||||| Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | ||||||||||| || || |||||||| ||||| || || || ||| || ||||||| Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 |||| |||| || ||| || | | |||||||| || || || || || | Sbjct 1019 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 |||||| || |||||||| ||||| || || || ||||| |||||||| ||||| || | Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 | || ||||||||||||| ||| |||||||| || ||||| || || |||||||| | Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 | || |||||||| || ||||||||||||||||| | ||| | ||| ||||| |||| Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 || | || || ||||| |||||||| || | | ||| |||| || || | || | Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 |||||||||| || | |||||||||||||||||||||||||| ||||| || ||||||| Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||| ||||||||||| || || |||||| Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 533 bits (590), Expect = 2e-146 Identities = 715/991 (72%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || ||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 35982 GACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 36041 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || || ||||| ||||| || ||||| ||||| || | || Sbjct 36042 TTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCC 36101 Query 164037 TCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGA 164092 |||| | ||| ||| ||| || ||| | || || || || || || |||||| | Sbjct 36102 ---AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAA 36157 Query 164093 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAG 164152 | | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 36158 TAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG 36217 Query 164153 GTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGAT 164212 ||||| ||| | || || || ||| ||||||| || | ||||| |||||| || || Sbjct 36218 CTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAAT 36277 Query 164213 CGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGC 164272 ||||||||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 36278 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAATTGCGACCTTATAATGC 36337 Query 164273 TATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGG 164332 || || ||||||| ||| |||||||| ||||| || ||||| || || || || || Sbjct 36338 AATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGG 36397 Query 164333 GCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTT 164392 || ||| ||||||||||||| || ||||| || |||||||| || ||||| || | Sbjct 36398 TCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCT 36457 Query 164393 GTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452 || ||||||| || ||||| |||||| | |||||||| ||||||||||| ||||| || Sbjct 36458 TTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGG 36517 Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 | | || | |||||| || ||||| |||||||| ||||||||||| |||||||| || Sbjct 36518 TGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATT 36577 Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGAC 164572 |||||||||||| |||| || ||| || || | || || |||| ||||| || Sbjct 36578 TGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAAC 36637 Query 164573 TTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 164632 || ||||||||||| || |||||||| |||||||| || ||||| ||||||| ||| Sbjct 36638 CTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAA 36697 Query 164633 TAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 164692 ||| |||||||| || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 36698 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGC 36757 Query 164693 TATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 164752 | |||| | |||| || || || || || ||||||||||| || || || ||||| || Sbjct 36758 TCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAAT 36817 Query 164753 TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812 | ||||| || ||||||||||||||||| ||||| || || || || || | || || Sbjct 36818 CCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGA 36877 Query 164813 AGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGA 164872 || | ||||| |||||||| | ||| ||||| || ||| || |||| || || Sbjct 36878 GGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 36937 Query 164873 GGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| ||||| || | || ||||| || ||| Sbjct 36938 GGAGGTTCTACCCCGTGGAAACGCTCTTTAA 36968 >seq170570 Length=388 Score = 122 bits (134), Expect = 1e-22 Identities = 139/183 (76%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 164343 TGGTTCTTTGCCCCCTCGTTTGGG-GTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCA 164401 || ||||||| || |||||| || || | | |||| || | ||| |||| || |||| Sbjct 260 TGATTCTTTGAGCC-TCGTTTTGGTGTAGTGACGATATTTCGGTTCATCTTTTTTTTCCA 202 Query 164402 AGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGG 164461 ||| | |||| |||| | | |||||||| |||||||||| ||| | || | || | Sbjct 201 AGGGTCTTATAATTGGATATTAAACCCCTTTCATATGATGGA-GTTTCTGGTGTATTTCG 143 Query 164462 TGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGG 164521 || || | | || ||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 142 TGCTGTTTTACTATGTGCTATTCATGGTGCTATTGTAGAAAATACTTTATTTGAAGATGG 83 Query 164522 TGA 164524 ||| Sbjct 82 TGA 80 >seq9524 Length=8324 Score = 116 bits (128), Expect = 4e-21 Identities = 214/315 (68%), Gaps = 18/315 (6%) Strand=Plus/Minus Query 161056 GTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCC 161115 |||| |||||||||||| |||| |||||||| || |||| ||| || |||| | |||| Sbjct 897 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCC 838 Query 161116 ACATGTT-------GGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCAT 161168 ||||||| || | ||||||| || || ||||| || ||||| Sbjct 837 ACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCAC 788 Query 161169 GGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTAT 161228 |||| |||| || ||| || | || |||||||| || || || || | || | Sbjct 787 GGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAA 728 Query 161229 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTC 161288 | |||| ||||||| ||| || || || ||| | || || ||||||||| ||| || Sbjct 727 AGATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTT 668 Query 161289 GGTCGCCTGAT-CTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCT 161347 || |||| ||||| ||| ||| ||| ||| || | ||| || || |||||||| Sbjct 667 GGCTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCT 608 Query 161348 CGCAGCATGGCCTGT 161362 | || |||||||| Sbjct 607 AGATGCTTGGCCTGT 593 >seq93305 Length=279 Score = 100 bits (110), Expect = 3e-16 Identities = 140/192 (73%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 164337 TCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTC----TT 164392 ||| |||||||| ||| || | ||| || | | |||||| || | ||| || || Sbjct 262 TCTTGTTGGTTCCTTGAGCC-TAGTTATGG-TAGTGGCGATATTTTGGTTCATCCTTTTT 205 Query 164393 GTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452 || ||||| | | |||| ||||| | |||||||| ||||||||||| ||||| | Sbjct 204 TTTTTTCCAATGGTCTTATAAGTGGACTTTGAACCCCTTTCATATGATGGGAGTTGCCTG 145 Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 | | || | |||||| || |||||| ||||||| ||||| |||| |||| ||| || Sbjct 144 TGTATTGGGCGCTGCTCTGCTATGTGCT-TTCATGGCGCTACTATAGAAAATATTTTATT 86 Query 164513 TGAAGATGGTGA 164524 |||||||||||| Sbjct 85 TGAAGATGGTGA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557660587299200