Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq453 226 7e-57 seq224 73.4 1e-10 >seq453 Length=77385 Score = 226 bits (250), Expect = 7e-57 Identities = 310/415 (75%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 48916 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 48972 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||||| ||||||| ||| | || |||||| || | || Sbjct 48973 ACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 49028 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 49029 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 49086 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | || Sbjct 49087 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGG 49143 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 49144 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 49202 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 49203 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 49262 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 49263 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 49317 >seq224 Length=3088089 Score = 73.4 bits (80), Expect = 1e-10 Identities = 134/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTTTGCCACTG 194 |||||| |||||| | ||||||||||| |||| | |||| || | | ||||||| Sbjct 2641726 GCCCTATGAAGACTTG-TTTTCGCTACGGCTCCGATGTATTCCCTTCACCAA-GCCACTG 2641783 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCC 253 || |||| | | | |||| | | ||| | || |||| | | || | | ||| Sbjct 2641784 CCTATGAGTCACCGGCTCATTCTTAATTAGGAAAGCGGTCAG--AGCCTAGAGCTCCTCC 2641841 Query 254 CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTC 313 ||||||||| || |||||||||| | ||||||||||||||| | ||||| |||||| Sbjct 2641842 CACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGAT-GGGGGTGCTTTTC 2641900 Query 314 GCCTTTCCC 322 || ||||| Sbjct 2641901 ACCATTCCC 2641909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241591246720