Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq453 185 3e-44 >seq453 Length=77385 Score = 185 bits (204), Expect = 3e-44 Identities = 396/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| | ||| Sbjct 49051 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 48992 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 48991 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 48932 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 48931 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 48872 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 48871 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 48817 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 48816 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 48759 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 48758 CCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 48699 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 48698 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 48641 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 48640 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 48582 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 48581 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 48523 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 48522 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 48481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689588088320