Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq14270 84.2 4e-14 seq7305 73.4 8e-11 >seq14270 Length=41679 Score = 84.2 bits (92), Expect = 4e-14 Identities = 209/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 933 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 992 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 993 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 1048 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 1049 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCAGAGGGCAATT-GTCACTGCT 1104 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | | Sbjct 1105 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 1164 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 1165 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 1224 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 1225 GCCACTCGAAC 1235 >seq7305 Length=44007 Score = 73.4 bits (80), Expect = 8e-11 Identities = 209/314 (67%), Gaps = 12/314 (4%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| ||| ||| Sbjct 20414 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGG-GAGGCCCACGG 20472 Query 72 -----TGACGGCGTGCCTT-TTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125 |||| |||||||| ||| | |||||||| ||| | | | | || || ||| Sbjct 20473 GCGTCTGACCGCGTGCCTCGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGT 20531 Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185 |||||| | ||| ||||| || ||||||||| ||| | ||||| | || | Sbjct 20532 TAAGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCAGAGGGCAATT-GTCACT 20587 Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGT 245 | | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 20588 GCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTA 20647 Query 246 GATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGA 305 |||||| |||||||| | |||||| | | ||||||| | | || ||||||||| Sbjct 20648 AGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGA 20707 Query 306 AAGGCCAATCAAAC 319 || |||| || ||| Sbjct 20708 AATGCCACTCGAAC 20721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972604710400