Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq14270 84.2 4e-14
seq7305 73.4 8e-11
>seq14270
Length=41679
Score = 84.2 bits (92), Expect = 4e-14
Identities = 209/311 (67%), Gaps = 11/311 (4%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68
|||| |||||||||| | |||| ||| || ||||| || |||| || || | |
Sbjct 933 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 992
Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128
|||| |||||||| ||| | |||||||| ||| | | | | || || ||||||
Sbjct 993 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 1048
Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188
||| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 1049 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCAGAGGGCAATT-GTCACTGCT 1104
Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248
| ||| |||| | |||||||| ||| || |||| ||||| ||| | | |
Sbjct 1105 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 1164
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
||||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 1165 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 1224
Query 309 GCCAATCAAAC 319
|||| || |||
Sbjct 1225 GCCACTCGAAC 1235
>seq7305
Length=44007
Score = 73.4 bits (80), Expect = 8e-11
Identities = 209/314 (67%), Gaps = 12/314 (4%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| ||| |||
Sbjct 20414 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGG-GAGGCCCACGG 20472
Query 72 -----TGACGGCGTGCCTT-TTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125
|||| |||||||| ||| | |||||||| ||| | | | | || || |||
Sbjct 20473 GCGTCTGACCGCGTGCCTCGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGT 20531
Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185
|||||| | ||| ||||| || ||||||||| ||| | ||||| | || |
Sbjct 20532 TAAGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCAGAGGGCAATT-GTCACT 20587
Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGT 245
| | ||| |||| | |||||||| ||| || |||| ||||| ||| | |
Sbjct 20588 GCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTA 20647
Query 246 GATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGA 305
|||||| |||||||| | |||||| | | ||||||| | | || |||||||||
Sbjct 20648 AGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGA 20707
Query 306 AAGGCCAATCAAAC 319
|| |||| || |||
Sbjct 20708 AATGCCACTCGAAC 20721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972604710400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |