Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq13509 401 9e-110 seq13964 87.8 3e-15 seq13963 87.8 3e-15 >seq13509 Length=41131 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 23095 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 23152 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23153 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 23212 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 23213 CCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 23272 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23273 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 23332 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 23333 GCCATAGTCCCTCTAA 23348 >seq13964 Length=30187 Score = 87.8 bits (96), Expect = 3e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 |||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 14744 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCAT 14689 >seq13963 Length=21622 Score = 87.8 bits (96), Expect = 3e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 |||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 20079 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCAT 20134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751853753625