Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq13509 401 9e-110
seq13964 87.8 3e-15
seq13963 87.8 3e-15
>seq13509
Length=41131
Score = 401 bits (444), Expect = 9e-110
Identities = 245/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 23095 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 23152
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23153 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 23212
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 23213 CCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 23272
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23273 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 23332
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 23333 GCCATAGTCCCTCTAA 23348
>seq13964
Length=30187
Score = 87.8 bits (96), Expect = 3e-15
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245
|||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 14744 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCAT 14689
>seq13963
Length=21622
Score = 87.8 bits (96), Expect = 3e-15
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245
|||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 20079 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCAT 20134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751853753625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |