Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq13509 232 3e-58
seq2226 149 3e-33
>seq13509
Length=41131
Score = 232 bits (256), Expect = 3e-58
Identities = 225/284 (79%), Gaps = 8/284 (3%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |
Sbjct 21656 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 21597
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT--GAGGG-TGCACCATC 519
|||||| | || || ||| ||| || || || ||| | ||||| |||||| |
Sbjct 21596 AACCCGCAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCCTTTGAGGGGTGCACCGCC 21540
Query 520 GACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579
|||||| | |||| | | || || || |||| |||||| |||| ||||||||||||
Sbjct 21539 GACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAG 21480
Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639
|||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 21479 ATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCG 21420
Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 21419 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 21376
Score = 156 bits (172), Expect = 2e-35
Identities = 131/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98
||||||| |||||||||||||||||| | || ||| |||||||| | || || ||||||
Sbjct 22039 CGAGTCGGGTTGTTTGGGAATGCAGCCCCAATAGGGCGGTAAATTCCGTCCAAGGCTAAA 21980
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| |||| |||||||||||| ||||||| | || ||||||||||||| |||||| |
Sbjct 21979 TACTGGCGTGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 21920
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| ||| || | ||||||||| | |||||||||
Sbjct 21919 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 21879
>seq2226
Length=17352
Score = 149 bits (164), Expect = 3e-33
Identities = 129/160 (81%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||| ||| | || ||||||||| |||| || || ||||| |
Sbjct 15592 GAGTCGGGTTGTTTGGGAATGAAGCCCCAATCGGGAGGTAATTTTCGTCCAAGGCTAACT 15533
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| |||| |||||||||||| ||||||| | || ||||||||||||| |||||| ||
Sbjct 15532 ACTGGCGTGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAA 15473
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||||| ||| || | ||||||||| | |||||||||
Sbjct 15472 AGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 15433
Score = 116 bits (128), Expect = 2e-23
Identities = 147/197 (75%), Gaps = 9/197 (5%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| |
Sbjct 15207 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 15148
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAA----CCCGTGAGGG-TGCACCA 517
|||||| | || || ||| ||| || | |||| || |||||| ||||||
Sbjct 15147 AACCCGCAAGGCGCAAGGAAGCTGATTGG--GCGGGACTTCCCCTTTGAGGGGTGCACCG 15090
Query 518 TCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAA 577
||||||| | |||| | | || || || |||| |||||| |||| ||||||| ||
Sbjct 15089 CCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCAAA 15030
Query 578 AGATGGTGAACTATGCC 594
|||||||||||||||||
Sbjct 15029 AGATGGTGAACTATGCC 15013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079569391250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |