Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq13509 232 3e-58 seq2226 149 3e-33 >seq13509 Length=41131 Score = 232 bits (256), Expect = 3e-58 Identities = 225/284 (79%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 21656 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 21597 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT--GAGGG-TGCACCATC 519 |||||| | || || ||| ||| || || || ||| | ||||| |||||| | Sbjct 21596 AACCCGCAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCCTTTGAGGGGTGCACCGCC 21540 Query 520 GACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 |||||| | |||| | | || || || |||| |||||| |||| |||||||||||| Sbjct 21539 GACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAG 21480 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 21479 ATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCG 21420 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 21419 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 21376 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 22039 CGAGTCGGGTTGTTTGGGAATGCAGCCCCAATAGGGCGGTAAATTCCGTCCAAGGCTAAA 21980 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 21979 TACTGGCGTGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 21920 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 21919 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 21879 >seq2226 Length=17352 Score = 149 bits (164), Expect = 3e-33 Identities = 129/160 (81%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||| ||| | || ||||||||| |||| || || ||||| | Sbjct 15592 GAGTCGGGTTGTTTGGGAATGAAGCCCCAATCGGGAGGTAATTTTCGTCCAAGGCTAACT 15533 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||||||||| ||||||| | || ||||||||||||| |||||| || Sbjct 15532 ACTGGCGTGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAA 15473 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| ||| || | ||||||||| | ||||||||| Sbjct 15472 AGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 15433 Score = 116 bits (128), Expect = 2e-23 Identities = 147/197 (75%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 15207 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 15148 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAA----CCCGTGAGGG-TGCACCA 517 |||||| | || || ||| ||| || | |||| || |||||| |||||| Sbjct 15147 AACCCGCAAGGCGCAAGGAAGCTGATTGG--GCGGGACTTCCCCTTTGAGGGGTGCACCG 15090 Query 518 TCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAA 577 ||||||| | |||| | | || || || |||| |||||| |||| ||||||| || Sbjct 15089 CCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCAAA 15030 Query 578 AGATGGTGAACTATGCC 594 ||||||||||||||||| Sbjct 15029 AGATGGTGAACTATGCC 15013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079569391250