Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq7305 141 1e-31
seq14270 105 9e-21
seq17268 104 3e-20
seq4421 95.1 2e-17
>seq7305
Length=44007
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 21776 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 21718
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 21717 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTCCT------------- 21671
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 21670 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 21617
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 21616 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 21557
Query 246 GTA 248
|||
Sbjct 21556 GTA 21554
>seq14270
Length=41679
Score = 105 bits (116), Expect = 9e-21
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202
||||||||||||||||||||| |||| |||||||||| ||||||| | |||| | ||
Sbjct 2174 CACCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCG 2115
Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 2114 CGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 2069
>seq17268
Length=15521
Score = 104 bits (114), Expect = 3e-20
Identities = 131/182 (72%), Gaps = 20/182 (11%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 13297 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGAAGACC 13355
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| | |
Sbjct 13356 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTC-------------CT 13402
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || | | |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 13403 TTGT------GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 13456
Query 186 TA 187
||
Sbjct 13457 TA 13458
>seq4421
Length=13552
Score = 95.1 bits (104), Expect = 2e-17
Identities = 81/100 (81%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202
||||||||||||||||||||| |||| |||||||||| ||||||| | |||| | ||
Sbjct 7751 CACCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCG 7810
Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| ||| ||||||||||||| || |||||||| ||||
Sbjct 7811 CGCCCCTAGGTATTCTCTACCTACCCCCCTGTGTCAGTTT 7850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694264955475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |