Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq7305 141 1e-31 seq14270 105 9e-21 seq17268 104 3e-20 seq4421 95.1 2e-17 >seq7305 Length=44007 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 21776 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 21718 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 21717 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTCCT------------- 21671 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 21670 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 21617 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 21616 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 21557 Query 246 GTA 248 ||| Sbjct 21556 GTA 21554 >seq14270 Length=41679 Score = 105 bits (116), Expect = 9e-21 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||||||||||||||||||||| |||| |||||||||| ||||||| | |||| | || Sbjct 2174 CACCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCG 2115 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 2114 CGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 2069 >seq17268 Length=15521 Score = 104 bits (114), Expect = 3e-20 Identities = 131/182 (72%), Gaps = 20/182 (11%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 13297 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGAAGACC 13355 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| | | Sbjct 13356 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTC-------------CT 13402 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 13403 TTGT------GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 13456 Query 186 TA 187 || Sbjct 13457 TA 13458 >seq4421 Length=13552 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||||||||||||||||||||| |||| |||||||||| ||||||| | |||| | || Sbjct 7751 CACCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCG 7810 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | ||| ||||||||||||| || |||||||| |||| Sbjct 7811 CGCCCCTAGGTATTCTCTACCTACCCCCCTGTGTCAGTTT 7850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694264955475