Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq7305 269 7e-70 seq17268 235 1e-59 seq2025 107 5e-21 seq12871 78.8 2e-12 seq14270 75.2 3e-11 >seq7305 Length=44007 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 21966 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 21907 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 21847 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 21846 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 21787 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 21786 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 21727 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 21726 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------TC 21673 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 21672 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 21630 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 21629 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 21572 >seq17268 Length=15521 Score = 235 bits (260), Expect = 1e-59 Identities = 288/397 (73%), Gaps = 27/397 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 13107 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 13166 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 13167 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTA 13226 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCC 188 | ||||||||||||||| |||||||||| || ||| | | || || | ||| Sbjct 13227 TAGTTACGGCCGCCGTTCACCGGGGCTTTAGTCGCCGGCTCCCCTTTCATCAGGTCACCA 13286 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 13287 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 13346 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || || |||||||||| ||||||||||| |||||||| || ||||| Sbjct 13347 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------TC 13400 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 13401 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 13443 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCT 405 ||||| |||||||| ||||| ||||| || ||| Sbjct 13444 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCACGCCCCT 13480 >seq2025 Length=1832 Score = 107 bits (118), Expect = 5e-21 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| ||||| | |||||||||| || Sbjct 1770 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGAGTCCATGTCGGAGACAGCGGGGCA 1711 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 118 ||||||| ||||||||||| |||| ||||| |||||||||||||||||| Sbjct 1710 GTCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTA 1659 >seq12871 Length=45515 Score = 78.8 bits (86), Expect = 2e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119 ||||||||||| ||||||| |||||||||||||||||||||||| |||| ||| Sbjct 6272 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAATTCGTTAC 6220 >seq14270 Length=41679 Score = 75.2 bits (82), Expect = 3e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||| | || ||||||| |||||||| ||||| |||| || Sbjct 2170 CCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCC 2111 Query 403 CCTTGGTATTCTCTACCCAACCAC 426 ||| ||||||||||||| | |||| Sbjct 2110 CCTAGGTATTCTCTACCTACCCAC 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260546894400