Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq7305 269 7e-70
seq17268 235 1e-59
seq2025 107 5e-21
seq12871 78.8 2e-12
seq14270 75.2 3e-11
>seq7305
Length=44007
Score = 269 bits (298), Expect = 7e-70
Identities = 308/418 (74%), Gaps = 27/418 (6%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 21966 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 21907
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 21847
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| |||||||||||| || ||| | | | || | |||
Sbjct 21846 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 21787
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 21786 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 21727
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 21726 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------TC 21673
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | ||||||||||||||||||| || ||
Sbjct 21672 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 21630
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 21629 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 21572
>seq17268
Length=15521
Score = 235 bits (260), Expect = 1e-59
Identities = 288/397 (73%), Gaps = 27/397 (7%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 13107 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 13166
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 13167 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTA 13226
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCC 188
| ||||||||||||||| |||||||||| || ||| | | || || | |||
Sbjct 13227 TAGTTACGGCCGCCGTTCACCGGGGCTTTAGTCGCCGGCTCCCCTTTCATCAGGTCACCA 13286
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 13287 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 13346
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| || |||||||||| ||||||||||| |||||||| || |||||
Sbjct 13347 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------TC 13400
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | ||||||||||||||||||| || ||
Sbjct 13401 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 13443
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCT 405
||||| |||||||| ||||| ||||| || |||
Sbjct 13444 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCACGCCCCT 13480
>seq2025
Length=1832
Score = 107 bits (118), Expect = 5e-21
Identities = 91/112 (81%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| ||||| | |||||||||| ||
Sbjct 1770 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGAGTCCATGTCGGAGACAGCGGGGCA 1711
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 118
||||||| ||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 1710 GTCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTA 1659
>seq12871
Length=45515
Score = 78.8 bits (86), Expect = 2e-12
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119
||||||||||| ||||||| |||||||||||||||||||||||| |||| |||
Sbjct 6272 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAATTCGTTAC 6220
>seq14270
Length=41679
Score = 75.2 bits (82), Expect = 3e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402
||||||||||||||||| | || ||||||| |||||||| ||||| |||| ||
Sbjct 2170 CCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCC 2111
Query 403 CCTTGGTATTCTCTACCCAACCAC 426
||| ||||||||||||| | ||||
Sbjct 2110 CCTAGGTATTCTCTACCTACCCAC 2087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260546894400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |