Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq17268 338 1e-90
seq7305 338 1e-90
seq12871 109 1e-21
seq2025 89.7 1e-15
>seq17268
Length=15521
Score = 338 bits (374), Expect = 1e-90
Identities = 288/352 (82%), Gaps = 6/352 (2%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | ||||||||||| || | ||||||||||||| ||||||
Sbjct 13107 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 13166
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 13167 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTA 13226
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGC-TC---TAACAG 182
||||||||||||||||| || ||||||| ||| | ||| | || | || | ||
Sbjct 13227 TAGTTACGGCCGCCGTTCACCGGGGCTTTAGTCGCCGGCTCCCCTTTCATCAGGTCACCA 13286
Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242
| |||| ||||||| |||| |||||||||||||| || |||||| ||||| ||||||
Sbjct 13287 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 13346
Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--GTCAT 300
|| | ||||||||||||||||||||||||| |||||| || ||||| ||| | |
Sbjct 13347 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTCCTTTGT 13406
Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
|||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 13407 GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 13458
>seq7305
Length=44007
Score = 338 bits (374), Expect = 1e-90
Identities = 288/352 (82%), Gaps = 6/352 (2%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | ||||||||||| || | ||||||||||||| ||||||
Sbjct 21966 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 21907
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 21847
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182
||||||||||||||||| || ||||||| || | ||| | | | || | ||
Sbjct 21846 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 21787
Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242
| |||| ||||||| |||| |||||||||||||| || |||||| ||||| ||||||
Sbjct 21786 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 21727
Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--GTCAT 300
|| || ||||||||||||||||||||||||| |||||| || ||||| ||| | |
Sbjct 21726 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTCCTTTGT 21667
Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
|||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 21666 GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 21615
>seq12871
Length=45515
Score = 109 bits (120), Expect = 1e-21
Identities = 77/87 (89%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 28 TTTCACCGAGTCTATTGTTGAGACAGTGCCCAA-ATCGTTACGCCTTTCGTGCGGGTCGG 86
|||||||||| || | |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 6306 TTTCACCGAGCCTCTCTCTGAGACCATGCCCAAGATCGTTACGCCTTTCGTGCGGGTCGG 6247
Query 87 AACTTACCCGACAAGGAATTTCGCTAC 113
|||||||||||||||||| |||| |||
Sbjct 6246 AACTTACCCGACAAGGAAATTCGTTAC 6220
>seq2025
Length=1832
Score = 89.7 bits (98), Expect = 1e-15
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
||| | |||||||||| | || | ||||||||||||||| || ||||||| | |
Sbjct 1770 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGAGTCCATGTCGGAGACAGCGGGGCA 1711
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112
||||||| || ||||||| |||| ||||| ||||||||||||||||||
Sbjct 1710 GTCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTA 1659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062186723200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |