Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq17268 338 1e-90 seq7305 338 1e-90 seq12871 109 1e-21 seq2025 89.7 1e-15 >seq17268 Length=15521 Score = 338 bits (374), Expect = 1e-90 Identities = 288/352 (82%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 13107 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 13166 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 13167 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTA 13226 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGC-TC---TAACAG 182 ||||||||||||||||| || ||||||| ||| | ||| | || | || | || Sbjct 13227 TAGTTACGGCCGCCGTTCACCGGGGCTTTAGTCGCCGGCTCCCCTTTCATCAGGTCACCA 13286 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 13287 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 13346 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--GTCAT 300 || | ||||||||||||||||||||||||| |||||| || ||||| ||| | | Sbjct 13347 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTCCTTTGT 13406 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 13407 GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 13458 >seq7305 Length=44007 Score = 338 bits (374), Expect = 1e-90 Identities = 288/352 (82%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 21966 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 21907 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 21847 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 21846 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 21787 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 21786 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 21727 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--GTCAT 300 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | | Sbjct 21726 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTCCTTTGT 21667 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 21666 GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 21615 >seq12871 Length=45515 Score = 109 bits (120), Expect = 1e-21 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 28 TTTCACCGAGTCTATTGTTGAGACAGTGCCCAA-ATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||| || | |||||| ||||||| |||||||||||||||||||||||||| Sbjct 6306 TTTCACCGAGCCTCTCTCTGAGACCATGCCCAAGATCGTTACGCCTTTCGTGCGGGTCGG 6247 Query 87 AACTTACCCGACAAGGAATTTCGCTAC 113 |||||||||||||||||| |||| ||| Sbjct 6246 AACTTACCCGACAAGGAAATTCGTTAC 6220 >seq2025 Length=1832 Score = 89.7 bits (98), Expect = 1e-15 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||||||| || ||||||| | | Sbjct 1770 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGAGTCCATGTCGGAGACAGCGGGGCA 1711 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 ||||||| || ||||||| |||| ||||| |||||||||||||||||| Sbjct 1710 GTCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTA 1659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062186723200