Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq19444 484 2e-134 seq14253 484 2e-134 seq18754 336 7e-90 seq9535 192 2e-46 seq154 98.7 3e-18 seq7712 82.4 2e-13 seq2188 82.4 2e-13 >seq19444 Length=5613 Score = 484 bits (536), Expect = 2e-134 Identities = 408/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1548 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1489 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 1488 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1429 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 1428 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 1371 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1370 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 1311 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 ||||||| |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 1310 CATCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 1251 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 1250 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 1191 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 1190 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 1131 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 1130 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 1071 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 1070 CGGTGAATCCGTTCCCG 1054 >seq14253 Length=20855 Score = 484 bits (536), Expect = 2e-134 Identities = 408/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 20370 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 20311 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 20310 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 20251 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 20250 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 20193 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 20192 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 20133 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 ||||||| |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 20132 CATCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 20073 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 20072 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 20013 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 20012 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 19953 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 19952 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 19893 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 19892 CGGTGAATCCGTTCCCG 19876 >seq18754 Length=8824 Score = 336 bits (372), Expect = 7e-90 Identities = 337/435 (77%), Gaps = 12/435 (3%) Strand=Plus/Minus Query 63 GGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTA 122 |||||||||||| |||| |||||||||||||||| |||||||| | || ||||| Sbjct 8521 GGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTT 8462 Query 123 GAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCT 182 || | ||||| | || |||||| || | ||||||| ||||||| ||||||||||| Sbjct 8461 GAAAGAGAGGGGTGCC-TTCGGGA-ACGTGGACACAGGTGGTGCATGGCTGTCGTCAGCT 8404 Query 183 CGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA 242 |||| ||| || |||||||||||||| |||||||||||||||||| | |||||||||| Sbjct 8403 CGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCA 8344 Query 243 TCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGA 302 ||| | |||| || || || | |||||||||||| || ||||| ||| || Sbjct 8343 TCAATGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGA---------GGATGA 8293 Query 303 CGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAA 362 |||||| ||||||||||||||||| ||||| |||||||||||||||||| | |||| Sbjct 8292 CGTCAAGTCATCATGCCCCTTATGCCTTGGGAGACACACGTGCTACAATGGTCGGGACAA 8233 Query 363 AGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTA 422 |||| |||| | ||||| ||| || ||| ||| | |||| ||||||||| | Sbjct 8232 AGGGTCGCGATCCTGCGAGAGTGAGCTAACTCCAAAAACCCATCCTCAATTCGGATTGCA 8173 Query 423 GTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACG 481 |||||||||| || |||||||| ||||||||||||||||| | |||| ||| | || Sbjct 8172 AGCTGCAACTCGCCTGTATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCG 8113 Query 482 GTGAATACGTTCCCG 496 |||||| |||||||| Sbjct 8112 GTGAATCCGTTCCCG 8098 >seq9535 Length=27949 Score = 192 bits (212), Expect = 2e-46 Identities = 185/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| || ||||| Sbjct 12850 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCTTTATG 12909 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 12910 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 12969 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| || ||| ||||||||||||||| ||||||||||| | |||||| Sbjct 12970 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 13028 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 13029 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 13084 >seq154 Length=9399 Score = 98.7 bits (108), Expect = 3e-18 Identities = 137/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 43 GCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTT 102 ||||||||| | |||||| ||||||||| || ||| || ||||||| || | ||| Sbjct 4444 GCACAAGCGTTTGAGCATTGGGTTTAATTTGATGCATAGCAAAGAACCGTATTAGGGCTT 4385 Query 103 GACATCCTCTGACCCCTCTAGAGATAGAGGT---TTCC-CCTTCGGGGGACAGAGTGACA 158 ||||| | | | | |||| || | | ||| ||| || ||||| ||| | ||| Sbjct 4384 GACATGCCATAAGCTCTCTTGAAAGTGGGGTGCCTTCAGCCCTCGGGA-ACATGGACACA 4326 Query 159 GGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218 | || |||||||| ||||||| |||| | | | || |||| |||| ||||| ||||||| Sbjct 4325 GTTGGTGCATGGTGGTCGTCATCTCGAGCCCTAAGGTGTTTGGTTGAGTCCAACAACGAG 4266 Query 219 CGCAACCCT 227 |||||| || Sbjct 4265 CGCAACTCT 4257 >seq7712 Length=28187 Score = 82.4 bits (90), Expect = 2e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 409 CAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGA 468 ||||| ||||||| ||||||||||| | |||||| |||||| |||||||||| || Sbjct 10918 CAGTTAGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATTGCTAGTAATCACGGA 10977 Query 469 TCAGCATGCTACGGTGAATACGT 491 |||||||||| |||||||| || Sbjct 10978 TCAGCATGCTGTGGTGAATATGT 11000 >seq2188 Length=30466 Score = 82.4 bits (90), Expect = 2e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 409 CAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGA 468 ||||| ||||||| ||||||||||| | |||||| |||||| |||||||||| || Sbjct 24865 CAGTTAGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATTGCTAGTAATCACGGA 24806 Query 469 TCAGCATGCTACGGTGAATACGT 491 |||||||||| |||||||| || Sbjct 24805 TCAGCATGCTGTGGTGAATATGT 24783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503698072000