Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq19444 484 2e-134
seq14253 484 2e-134
seq18754 336 7e-90
seq9535 192 2e-46
seq154 98.7 3e-18
seq7712 82.4 2e-13
seq2188 82.4 2e-13
>seq19444
Length=5613
Score = 484 bits (536), Expect = 2e-134
Identities = 408/497 (82%), Gaps = 3/497 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1548 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1489
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 1488 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1429
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 1428 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 1371
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1370 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 1311
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
||||||| |||| || || || | |||||||||||| || ||||||||||||| |||
Sbjct 1310 CATCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 1251
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 1250 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 1191
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || ||| ||| || ||||||||||||||
Sbjct 1190 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 1131
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 1130 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 1071
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 1070 CGGTGAATCCGTTCCCG 1054
>seq14253
Length=20855
Score = 484 bits (536), Expect = 2e-134
Identities = 408/497 (82%), Gaps = 3/497 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 20370 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 20311
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 20310 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 20251
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 20250 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 20193
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 20192 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 20133
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
||||||| |||| || || || | |||||||||||| || ||||||||||||| |||
Sbjct 20132 CATCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 20073
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 20072 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 20013
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || ||| ||| || ||||||||||||||
Sbjct 20012 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 19953
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 19952 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 19893
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 19892 CGGTGAATCCGTTCCCG 19876
>seq18754
Length=8824
Score = 336 bits (372), Expect = 7e-90
Identities = 337/435 (77%), Gaps = 12/435 (3%)
Strand=Plus/Minus
Query 63 GGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTA 122
|||||||||||| |||| |||||||||||||||| |||||||| | || |||||
Sbjct 8521 GGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTT 8462
Query 123 GAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCT 182
|| | ||||| | || |||||| || | ||||||| ||||||| |||||||||||
Sbjct 8461 GAAAGAGAGGGGTGCC-TTCGGGA-ACGTGGACACAGGTGGTGCATGGCTGTCGTCAGCT 8404
Query 183 CGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA 242
|||| ||| || |||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 8403 CGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCA 8344
Query 243 TCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGA 302
||| | |||| || || || | |||||||||||| || ||||| ||| ||
Sbjct 8343 TCAATGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGA---------GGATGA 8293
Query 303 CGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAA 362
|||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||||
Sbjct 8292 CGTCAAGTCATCATGCCCCTTATGCCTTGGGAGACACACGTGCTACAATGGTCGGGACAA 8233
Query 363 AGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTA 422
|||| |||| | ||||| ||| || ||| ||| | |||| ||||||||| |
Sbjct 8232 AGGGTCGCGATCCTGCGAGAGTGAGCTAACTCCAAAAACCCATCCTCAATTCGGATTGCA 8173
Query 423 GTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACG 481
|||||||||| || |||||||| ||||||||||||||||| | |||| ||| | ||
Sbjct 8172 AGCTGCAACTCGCCTGTATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCG 8113
Query 482 GTGAATACGTTCCCG 496
|||||| ||||||||
Sbjct 8112 GTGAATCCGTTCCCG 8098
>seq9535
Length=27949
Score = 192 bits (212), Expect = 2e-46
Identities = 185/236 (78%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| || |||||
Sbjct 12850 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCTTTATG 12909
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386
||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| |
Sbjct 12910 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 12969
Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446
|| ||||| || ||| ||||||||||||||| ||||||||||| | ||||||
Sbjct 12970 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 13028
Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|||||||||||||||||| ||||||||||| ||||||||| || |||| ||||
Sbjct 13029 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 13084
>seq154
Length=9399
Score = 98.7 bits (108), Expect = 3e-18
Identities = 137/189 (72%), Gaps = 5/189 (3%)
Strand=Plus/Minus
Query 43 GCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTT 102
||||||||| | |||||| ||||||||| || ||| || ||||||| || | |||
Sbjct 4444 GCACAAGCGTTTGAGCATTGGGTTTAATTTGATGCATAGCAAAGAACCGTATTAGGGCTT 4385
Query 103 GACATCCTCTGACCCCTCTAGAGATAGAGGT---TTCC-CCTTCGGGGGACAGAGTGACA 158
||||| | | | | |||| || | | ||| ||| || ||||| ||| | |||
Sbjct 4384 GACATGCCATAAGCTCTCTTGAAAGTGGGGTGCCTTCAGCCCTCGGGA-ACATGGACACA 4326
Query 159 GGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218
| || |||||||| ||||||| |||| | | | || |||| |||| ||||| |||||||
Sbjct 4325 GTTGGTGCATGGTGGTCGTCATCTCGAGCCCTAAGGTGTTTGGTTGAGTCCAACAACGAG 4266
Query 219 CGCAACCCT 227
|||||| ||
Sbjct 4265 CGCAACTCT 4257
>seq7712
Length=28187
Score = 82.4 bits (90), Expect = 2e-13
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 409 CAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGA 468
||||| ||||||| ||||||||||| | |||||| |||||| |||||||||| ||
Sbjct 10918 CAGTTAGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATTGCTAGTAATCACGGA 10977
Query 469 TCAGCATGCTACGGTGAATACGT 491
|||||||||| |||||||| ||
Sbjct 10978 TCAGCATGCTGTGGTGAATATGT 11000
>seq2188
Length=30466
Score = 82.4 bits (90), Expect = 2e-13
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 409 CAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGA 468
||||| ||||||| ||||||||||| | |||||| |||||| |||||||||| ||
Sbjct 24865 CAGTTAGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATTGCTAGTAATCACGGA 24806
Query 469 TCAGCATGCTACGGTGAATACGT 491
|||||||||| |||||||| ||
Sbjct 24805 TCAGCATGCTGTGGTGAATATGT 24783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503698072000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |