Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq13509 304 2e-80 seq13964 78.8 1e-12 seq13963 78.8 1e-12 >seq13509 Length=41131 Score = 304 bits (336), Expect = 2e-80 Identities = 225/260 (87%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23238 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 23297 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || ||| | |||||||||||||||||| || Sbjct 23298 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGC 23357 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | ||| || | |||| |||||||| | ||||||||||||||| |||||| Sbjct 23358 CGTGGAGGGATACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 23417 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23418 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 23477 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 23478 GAAAGAGCTCTCAGTCTGTC 23497 >seq13964 Length=30187 Score = 78.8 bits (86), Expect = 1e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 |||||||||||||||||||||| | ||||||||||||| | | || ||| | |||||| Sbjct 14744 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCATAGTC 14685 Query 105 CCTCTAAGAAG 115 ||| ||||||| Sbjct 14684 CCTTTAAGAAG 14674 >seq13963 Length=21622 Score = 78.8 bits (86), Expect = 1e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 |||||||||||||||||||||| | ||||||||||||| | | || ||| | |||||| Sbjct 20079 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCATAGTC 20138 Query 105 CCTCTAAGAAG 115 ||| ||||||| Sbjct 20139 CCTTTAAGAAG 20149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796645041075