Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq13509 304 2e-80
seq13964 78.8 1e-12
seq13963 78.8 1e-12
>seq13509
Length=41131
Score = 304 bits (336), Expect = 2e-80
Identities = 225/260 (87%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23238 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 23297
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||
Sbjct 23298 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGC 23357
Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | ||| || | |||| |||||||| | ||||||||||||||| ||||||
Sbjct 23358 CGTGGAGGGATACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 23417
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23418 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 23477
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||| ||||||
Sbjct 23478 GAAAGAGCTCTCAGTCTGTC 23497
>seq13964
Length=30187
Score = 78.8 bits (86), Expect = 1e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104
|||||||||||||||||||||| | ||||||||||||| | | || ||| | ||||||
Sbjct 14744 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCATAGTC 14685
Query 105 CCTCTAAGAAG 115
||| |||||||
Sbjct 14684 CCTTTAAGAAG 14674
>seq13963
Length=21622
Score = 78.8 bits (86), Expect = 1e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104
|||||||||||||||||||||| | ||||||||||||| | | || ||| | ||||||
Sbjct 20079 TCTAAGGGCATCACAGACCTGTAACTGCCTCAAACTTCTGTGGCCTAAAAGGCCATAGTC 20138
Query 105 CCTCTAAGAAG 115
||| |||||||
Sbjct 20139 CCTTTAAGAAG 20149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796645041075
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |