Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq18100 403 3e-110 seq15999 403 3e-110 seq10334 150 3e-34 seq19884 91.5 3e-16 >seq18100 Length=3423 Score = 403 bits (446), Expect = 3e-110 Identities = 266/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | || ||||||||||||||||||||||||||||||| Sbjct 1951 TACTAGGTTGAATTACTATTGCAAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 2009 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 2010 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 2069 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2070 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 2129 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 2130 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 2189 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 2190 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 2242 >seq15999 Length=20577 Score = 403 bits (446), Expect = 3e-110 Identities = 266/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | || ||||||||||||||||||||||||||||||| Sbjct 1157 TACTAGGTTGAATTACTATTGCAAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1099 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1098 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1039 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1038 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 979 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 978 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 919 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 918 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 866 >seq10334 Length=7432 Score = 150 bits (166), Expect = 3e-34 Identities = 102/113 (90%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||| Sbjct 951 TGAACAATCCAACACTTGATGAATTCTGCTTCACAATGATAGGAAGAGCTGACATCGAAG 892 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| | ||||||||||||||||||||||||||| |||| Sbjct 891 GATCAAAAAGCAACGTCGATGTGAACGCTTGGCTGCCACAAGCCAGTT-TCCC 840 >seq19884 Length=5437 Score = 91.5 bits (100), Expect = 3e-16 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||| |||||||||| ||||||| ||| || ||||||||||| |||||||| ||||| Sbjct 4186 TTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTC 4127 Query 281 ATGGTTTGTATTC 293 | |||| |||||| Sbjct 4126 ACGGTTCGTATTC 4114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854228479200