Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq18100 403 3e-110
seq15999 403 3e-110
seq10334 150 3e-34
seq19884 91.5 3e-16
>seq18100
Length=3423
Score = 403 bits (446), Expect = 3e-110
Identities = 266/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 1951 TACTAGGTTGAATTACTATTGCAAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 2009
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 2010 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 2069
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 2129
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 2130 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 2189
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 2190 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 2242
>seq15999
Length=20577
Score = 403 bits (446), Expect = 3e-110
Identities = 266/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 1157 TACTAGGTTGAATTACTATTGCAAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1099
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1098 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1039
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 979
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 978 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 919
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 918 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 866
>seq10334
Length=7432
Score = 150 bits (166), Expect = 3e-34
Identities = 102/113 (90%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158
||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 951 TGAACAATCCAACACTTGATGAATTCTGCTTCACAATGATAGGAAGAGCTGACATCGAAG 892
Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 891 GATCAAAAAGCAACGTCGATGTGAACGCTTGGCTGCCACAAGCCAGTT-TCCC 840
>seq19884
Length=5437
Score = 91.5 bits (100), Expect = 3e-16
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280
||||||| |||||||||| ||||||| ||| || ||||||||||| |||||||| |||||
Sbjct 4186 TTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTC 4127
Query 281 ATGGTTTGTATTC 293
| |||| ||||||
Sbjct 4126 ACGGTTCGTATTC 4114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854228479200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |