Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq7305 174 3e-41 seq17268 167 5e-39 seq16419 114 3e-23 seq5042 78.8 2e-12 >seq7305 Length=44007 Score = 174 bits (192), Expect = 3e-41 Identities = 181/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGC-AGTTTG-ACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAG 168 |||||||| |||| | | ||||| | ||||||| |||||||||| ||||||||| Sbjct 22156 GGGACAGTCTCAGGTAGACTAGTTTCTAGTGGGGCGTAGGCCTCCCAAAAGGTAACGGAG 22215 Query 169 GCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGG 227 ||| ||||| | |||| | ||| ||| | || | | |||||||||||| |||| Sbjct 22216 GCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGG 22274 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| | Sbjct 22275 GAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGAC 22334 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 22335 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 22386 >seq17268 Length=15521 Score = 167 bits (184), Expect = 5e-39 Identities = 178/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 12918 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 12859 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 12858 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 12800 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 12799 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 12740 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| || |||||||| || |||||||| ||| || |||||| Sbjct 12739 TGCCGAGTGGAA-GGGCGTCGCTCAAC-GATAAAAGTTACTCTAGGGATA 12692 >seq16419 Length=10639 Score = 114 bits (126), Expect = 3e-23 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTT 232 ||||| | |||| | ||||||||| | || | | |||||||||||| ||||| | | Sbjct 2895 CAAAGGTTTCCTCGGGTTGGATGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCT 2837 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 || || | | |||| | || ||||||| |||||||||| |||| ||||| || ||| Sbjct 2836 TGGCTACAAGACCCACCCTTCGAGCAGGGTCGAAAGTCGGCCTTAGTGATCTAACGATGC 2777 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| |||| |||||| ||||||||||| ||| || |||||| Sbjct 2776 CGAGTGGAAGGGCCATCGCTCAACGGATAAAAGTTACTCTAGGGATA 2730 >seq5042 Length=59084 Score = 78.8 bits (86), Expect = 2e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 |||||| ||| | |||| || |||| |||||||||||||| | ||| ||||||| || Sbjct 10951 GTTTGATTGCAAGACCCACATGTCTGGCAGGGACGAAAGTTAGCCTTGGTGATCCGATGG 10892 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAA 322 ||| | | ||| |||| |||||| |||||||| Sbjct 10891 TGCCAAGTTGAAGGGCCATCGCTCAACGGATAA 10859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982202783200