Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq7305 174 3e-41
seq17268 167 5e-39
seq16419 114 3e-23
seq5042 78.8 2e-12
>seq7305
Length=44007
Score = 174 bits (192), Expect = 3e-41
Identities = 181/232 (78%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGC-AGTTTG-ACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAG 168
|||||||| |||| | | ||||| | ||||||| |||||||||| |||||||||
Sbjct 22156 GGGACAGTCTCAGGTAGACTAGTTTCTAGTGGGGCGTAGGCCTCCCAAAAGGTAACGGAG 22215
Query 169 GCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGG 227
||| ||||| | |||| | ||| ||| | || | | |||||||||||| ||||
Sbjct 22216 GCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGG 22274
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |
Sbjct 22275 GAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGAC 22334
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 22335 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 22386
>seq17268
Length=15521
Score = 167 bits (184), Expect = 5e-39
Identities = 178/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 12918 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 12859
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 12858 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 12800
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 12799 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 12740
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| || |||||||| || |||||||| ||| || ||||||
Sbjct 12739 TGCCGAGTGGAA-GGGCGTCGCTCAAC-GATAAAAGTTACTCTAGGGATA 12692
>seq16419
Length=10639
Score = 114 bits (126), Expect = 3e-23
Identities = 127/167 (76%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTT 232
||||| | |||| | ||||||||| | || | | |||||||||||| ||||| | |
Sbjct 2895 CAAAGGTTTCCTCGGGTTGGATGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCT 2837
Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292
|| || | | |||| | || ||||||| |||||||||| |||| ||||| || |||
Sbjct 2836 TGGCTACAAGACCCACCCTTCGAGCAGGGTCGAAAGTCGGCCTTAGTGATCTAACGATGC 2777
Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| ||||| |||| |||||| ||||||||||| ||| || ||||||
Sbjct 2776 CGAGTGGAAGGGCCATCGCTCAACGGATAAAAGTTACTCTAGGGATA 2730
>seq5042
Length=59084
Score = 78.8 bits (86), Expect = 2e-12
Identities = 73/93 (78%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
|||||| ||| | |||| || |||| |||||||||||||| | ||| ||||||| ||
Sbjct 10951 GTTTGATTGCAAGACCCACATGTCTGGCAGGGACGAAAGTTAGCCTTGGTGATCCGATGG 10892
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAA 322
||| | | ||| |||| |||||| ||||||||
Sbjct 10891 TGCCAAGTTGAAGGGCCATCGCTCAACGGATAA 10859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982202783200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |