Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq19444 230 5e-58 seq13392 230 5e-58 seq12299 196 1e-47 seq15957 168 1e-39 seq16277 158 3e-36 seq9389 158 3e-36 seq7170 138 2e-30 seq6365 86.0 1e-14 seq2870 75.2 2e-11 >seq19444 Length=5613 Score = 230 bits (254), Expect = 5e-58 Identities = 242/310 (78%), Gaps = 19/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 2011 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 2069 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 2070 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 2129 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||||||||||||||||||||||| ||| | || | | Sbjct 2130 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCT 2189 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || || || | | ||| | ||| || || | || | |||||||| Sbjct 2190 CCT-----CG---GG--CGGATTCCTCCTTTTGTCT-CCTCAG--CCTACGGGGTATTAG 2236 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 2237 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 2294 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 2295 GTCCGCCACT 2304 >seq13392 Length=67015 Score = 230 bits (254), Expect = 5e-58 Identities = 241/310 (78%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 55943 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 56001 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 56002 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 56061 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||||||||||||||||||||||| ||| | || | | Sbjct 56062 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCT 56121 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 56122 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 56167 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 56168 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 56225 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 56226 GTCCGCCACT 56235 >seq12299 Length=4959 Score = 196 bits (216), Expect = 1e-47 Identities = 179/221 (81%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 3068 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 3125 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| |||| |||||| || |||||||||||| || Sbjct 3126 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCC 3185 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC-ATTACC 177 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 3186 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTTACC 3245 Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 | |||||||| ||||| | || ||||||||| | ||||| Sbjct 3246 TGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 3286 >seq15957 Length=15107 Score = 168 bits (186), Expect = 1e-39 Identities = 194/256 (76%), Gaps = 19/256 (7%) Strand=Plus/Minus Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 || ||||||||||||||||| |||||||||||| |||||||| |||||||||||||| || Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTA 201 |||| ||| |||| |||||||||| ||| ||||||||||||||||||||||| ||| | | Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGA 1439 Query 202 GGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGG 261 | | | || || ||| || ||| |||| | | | | | || | || Sbjct 1438 GCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGG 1393 Query 262 TATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTAC 319 ||||||| |||||||| ||| | ||| || ||| ||||| ||| || || |||| Sbjct 1392 TATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTAC 1335 Query 320 TCACCCGTCCGCCGCT 335 ||||||||||||| || Sbjct 1334 TCACCCGTCCGCCACT 1319 >seq16277 Length=26332 Score = 158 bits (174), Expect = 3e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 113 ||||| |||||| | ||| ||||||||||||||||||||||||| | ||||||||| Sbjct 22159 TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTAGGTCGTGTCTCA 22100 Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173 || ||||||||||||||||||||||| |||||||||| |||| ||| ||| || ||| || Sbjct 22099 GTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTCTTCGTAAGCTAT 22040 Query 174 TACCTCACCAACTAG 188 ||| ||||||||||| Sbjct 22039 TACGTCACCAACTAG 22025 >seq9389 Length=10134 Score = 158 bits (174), Expect = 3e-36 Identities = 116/135 (86%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 113 ||||| |||||| | ||| ||||||||||||||||||||||||| | ||||||||| Sbjct 507 TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTAGGTCGTGTCTCA 566 Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173 || ||||||||||||||||||||||| |||||||||| |||| ||| ||| || ||| || Sbjct 567 GTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTCTTCGTAAGCTAT 626 Query 174 TACCTCACCAACTAG 188 ||| ||||||||||| Sbjct 627 TACGTCACCAACTAG 641 >seq7170 Length=20343 Score = 138 bits (152), Expect = 2e-30 Identities = 101/116 (87%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 31 CGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCC 90 |||| |||| ||||||| |||||||||||||||||||| |||||||||||||||| ||| Sbjct 20343 CGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCC 20285 Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 | ||||||| || |||||||||||| |||||||| |||||||||| ||||||| Sbjct 20284 GCAGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAG 20229 >seq6365 Length=16597 Score = 86.0 bits (94), Expect = 1e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 93 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGG 152 || |||| || |||||||||||| |||||||| |||||||||| ||||||| || | Sbjct 15570 AGCAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGC 15511 Query 153 ATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTA 191 ||| | |||||| |||| |||||| |||||||| ||| Sbjct 15510 ATC--AGGCTTGGTCAGCCTTTACCTGACCAACTACCTA 15474 >seq2870 Length=11522 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/94 (81%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| ||||| ||||| ||||||||||||||| ||||||| |||| ||| | Sbjct 11339 CCTTCTT-CACTCACGCAACATTG-CTGGATCAGGCTTTCACCCATTG-CCAAGATTTCT 11283 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 110 ||||||||| || || | ||||| | |||||| Sbjct 11282 CACTGCTGCTTCACG-CGAAGTCTAGGTCGTGTC 11250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071784796000