Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq19444 230 5e-58
seq13392 230 5e-58
seq12299 196 1e-47
seq15957 168 1e-39
seq16277 158 3e-36
seq9389 158 3e-36
seq7170 138 2e-30
seq6365 86.0 1e-14
seq2870 75.2 2e-11
>seq19444
Length=5613
Score = 230 bits (254), Expect = 5e-58
Identities = 242/310 (78%), Gaps = 19/310 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 2011 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 2069
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 2070 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 2129
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||||||||||||||||||||||| ||| | || | |
Sbjct 2130 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCT 2189
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || || || | | ||| | ||| || || | || | ||||||||
Sbjct 2190 CCT-----CG---GG--CGGATTCCTCCTTTTGTCT-CCTCAG--CCTACGGGGTATTAG 2236
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 2237 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 2294
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 2295 GTCCGCCACT 2304
>seq13392
Length=67015
Score = 230 bits (254), Expect = 5e-58
Identities = 241/310 (78%), Gaps = 20/310 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 55943 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 56001
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 56002 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 56061
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||||||||||||||||||||||| ||| | || | |
Sbjct 56062 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCT 56121
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 56122 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 56167
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 56168 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 56225
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 56226 GTCCGCCACT 56235
>seq12299
Length=4959
Score = 196 bits (216), Expect = 1e-47
Identities = 179/221 (81%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 3068 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 3125
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| |||| |||||| || |||||||||||| ||
Sbjct 3126 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCC 3185
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC-ATTACC 177
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||
Sbjct 3186 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTTACC 3245
Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
| |||||||| ||||| | || ||||||||| | |||||
Sbjct 3246 TGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 3286
>seq15957
Length=15107
Score = 168 bits (186), Expect = 1e-39
Identities = 194/256 (76%), Gaps = 19/256 (7%)
Strand=Plus/Minus
Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142
|| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499
Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTA 201
|||| ||| |||| |||||||||| ||| ||||||||||||||||||||||| ||| | |
Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGA 1439
Query 202 GGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGG 261
| | | || || ||| || ||| |||| | | | | | || | ||
Sbjct 1438 GCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGG 1393
Query 262 TATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTAC 319
||||||| |||||||| ||| | ||| || ||| ||||| ||| || || ||||
Sbjct 1392 TATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTAC 1335
Query 320 TCACCCGTCCGCCGCT 335
||||||||||||| ||
Sbjct 1334 TCACCCGTCCGCCACT 1319
>seq16277
Length=26332
Score = 158 bits (174), Expect = 3e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 113
||||| |||||| | ||| ||||||||||||||||||||||||| | |||||||||
Sbjct 22159 TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTAGGTCGTGTCTCA 22100
Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173
|| ||||||||||||||||||||||| |||||||||| |||| ||| ||| || ||| ||
Sbjct 22099 GTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTCTTCGTAAGCTAT 22040
Query 174 TACCTCACCAACTAG 188
||| |||||||||||
Sbjct 22039 TACGTCACCAACTAG 22025
>seq9389
Length=10134
Score = 158 bits (174), Expect = 3e-36
Identities = 116/135 (86%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 113
||||| |||||| | ||| ||||||||||||||||||||||||| | |||||||||
Sbjct 507 TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTAGGTCGTGTCTCA 566
Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173
|| ||||||||||||||||||||||| |||||||||| |||| ||| ||| || ||| ||
Sbjct 567 GTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTCTTCGTAAGCTAT 626
Query 174 TACCTCACCAACTAG 188
||| |||||||||||
Sbjct 627 TACGTCACCAACTAG 641
>seq7170
Length=20343
Score = 138 bits (152), Expect = 2e-30
Identities = 101/116 (87%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 31 CGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCC 90
|||| |||| ||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 20343 CGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCC 20285
Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146
| ||||||| || |||||||||||| |||||||| |||||||||| |||||||
Sbjct 20284 GCAGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAG 20229
>seq6365
Length=16597
Score = 86.0 bits (94), Expect = 1e-14
Identities = 79/99 (80%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 93 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGG 152
|| |||| || |||||||||||| |||||||| |||||||||| ||||||| || |
Sbjct 15570 AGCAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGC 15511
Query 153 ATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTA 191
||| | |||||| |||| |||||| |||||||| |||
Sbjct 15510 ATC--AGGCTTGGTCAGCCTTTACCTGACCAACTACCTA 15474
>seq2870
Length=11522
Score = 75.2 bits (82), Expect = 2e-11
Identities = 76/94 (81%), Gaps = 4/94 (4%)
Strand=Plus/Minus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
||||||| ||| ||||| ||||| ||||||||||||||| ||||||| |||| ||| |
Sbjct 11339 CCTTCTT-CACTCACGCAACATTG-CTGGATCAGGCTTTCACCCATTG-CCAAGATTTCT 11283
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 110
||||||||| || || | ||||| | ||||||
Sbjct 11282 CACTGCTGCTTCACG-CGAAGTCTAGGTCGTGTC 11250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071784796000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |