Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq14270 259 2e-66 seq7305 248 3e-63 seq17518 107 7e-21 seq5234 96.9 1e-17 seq741 93.3 2e-16 seq3589 77.0 1e-11 >seq14270 Length=41679 Score = 259 bits (286), Expect = 2e-66 Identities = 344/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1277 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1218 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 1217 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1158 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 1157 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1098 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||| | |||||||||||||||||||| || || |||| Sbjct 1097 ACAAT----TGCCCTCTGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 1045 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 1044 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 990 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 989 CCCT---GGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 938 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 937 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 878 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 877 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 828 >seq7305 Length=44007 Score = 248 bits (274), Expect = 3e-63 Identities = 338/463 (73%), Gaps = 24/463 (5%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 20763 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 20704 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 20703 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 20644 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 20643 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 20584 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||| | |||||||||||||||||||| || || |||| Sbjct 20583 ACAAT----TGCCCTCTGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 20531 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAA-AAGGCACGCCGTCACCTGG 428 || || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 20530 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACGAGGCACGCGGTCA----- 20478 Query 429 TACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCA 488 || || || | |||| || | ||| || | ||||||| || |||||||| Sbjct 20477 GACGCCCGTGGGCCTCC--CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCA 20420 Query 489 CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 ||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| Sbjct 20419 CTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCC 20360 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 |||||||||||| ||| |||||||| | |||||||||| Sbjct 20359 AGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACG 20317 >seq17518 Length=15840 Score = 107 bits (118), Expect = 7e-21 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||| ||||||||| ||||||||||||||| | | |||||||||| Sbjct 13931 TCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCA 13990 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 13991 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 14044 >seq5234 Length=25424 Score = 96.9 bits (106), Expect = 1e-17 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||| || ||||||||||||||| | |||| |||||||| ||||||||||| || Sbjct 14596 TTTCATGTTCTATTTCACTCCCCG--ATGGGTTTTTTTCACCCCTCCCTCACGGTCCTAC 14653 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCC 576 | |||||||||| ||| |||||||||||| ||| |||||||| Sbjct 14654 TGCGCTATCGGTTACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 14698 >seq741 Length=5617 Score = 93.3 bits (102), Expect = 2e-16 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 ||||||||||||||||||||||||||||| |||||||||||| |||| || | ||||| Sbjct 3463 ACTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTAAGGCT 3522 Query 564 TAACGGGTGGTCCC 577 || |||||||||| Sbjct 3523 TAGAGGGTGGTCCC 3536 >seq3589 Length=12208 Score = 77.0 bits (84), Expect = 1e-11 Identities = 92/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 |||| ||||| || |||||||||||| | || | |||||| | |||| ||||||| Sbjct 1553 CATGATTTCATGTTCTATTTCACTCCTCAATGAGGTTTTTTTTCAACCTTCCATCACGGT 1494 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 |||| | | |||| | |||| | ||||||||| |||| |||||||| ||||| Sbjct 1493 ACTTCTTCACTATTGATCACTCATGAGTATTTAACCTTACAAGGTGGTCCTTGTTGATTC 1434 Query 587 ACACG 591 ||||| Sbjct 1433 ACACG 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817235116800