Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq14270 217 4e-54
seq7305 210 5e-52
seq17518 105 2e-20
seq5234 95.1 3e-17
seq3589 80.6 7e-13
seq741 77.0 8e-12
>seq14270
Length=41679
Score = 217 bits (240), Expect = 4e-54
Identities = 310/420 (74%), Gaps = 26/420 (6%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 1211 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 1155
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 1154 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 1099
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | ||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 1098 GACAATT-GCCCTCTGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 1041
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243
||||||| || |||||| | | |||| | ||| ||| |||| |||| |||
Sbjct 1040 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 987
Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300
|||||||| ||||||||| || |||||||||| | ||||||||||||||| |
Sbjct 986 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 929
Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360
|||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||
Sbjct 928 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 870
Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 869 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 810
>seq7305
Length=44007
Score = 210 bits (232), Expect = 5e-52
Identities = 312/422 (74%), Gaps = 23/422 (5%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 20697 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 20641
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 20640 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 20585
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | ||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 20584 GACAATT-GCCCTCTGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 20527
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAA-AGGTACGCAGTCACCCAACAAAG 245
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 20526 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACGAGGCACGCGGTCAGACGCCC--G 20470
Query 246 TGGGC-----TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300
||||| |||||||||||| || |||||||||| | ||||||||||||||| |
Sbjct 20469 TGGGCCTCCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 20410
Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360
|||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||
Sbjct 20409 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 20351
Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGAC-AAAGTTTC-TCGTGCTCCGTCCTACT 418
|||||||| | | |||||| | ||||| || |||| | ||||| || | |||||
Sbjct 20350 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGAGTTCCACCGTGCCCCATGCTACT 20291
Query 419 CG 420
||
Sbjct 20290 CG 20289
>seq17518
Length=15840
Score = 105 bits (116), Expect = 2e-20
Identities = 104/133 (78%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347
||||||||| | |||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 13931 TCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTC 13989
Query 348 AGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGC 407
| ||| |||||||||||||| | | |||||| | ||||| || || | |||||
Sbjct 13990 ACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGC 14049
Query 408 TCCGTCCTACTCG 420
|| | ||||||
Sbjct 14050 CCCATGTTACTCG 14062
>seq5234
Length=25424
Score = 95.1 bits (104), Expect = 3e-17
Identities = 88/111 (79%), Gaps = 3/111 (3%)
Strand=Plus/Plus
Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328
|||| ||||| | ||||||||||||||| | ||||| ||||| || ||||||||||
Sbjct 14591 TACGATTTCATGTTCTATTTCACTCCCCGAT---GGGTTTTTTTCACCCCTCCCTCACGG 14647
Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379
| ||| | | |||||||| | ||| |||||||||||||| | | ||||||
Sbjct 14648 TCCTACTGCGCTATCGGTTACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 14698
>seq3589
Length=12208
Score = 80.6 bits (88), Expect = 7e-13
Identities = 97/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
|||||||||||| | ||| | ||||| | ||||||||||||| | | || || |
Sbjct 1570 CTCCCACTGCTTTTGGTCAT--GATTTCATGTTCTATTTCACTCCTCAAT-GAGGTTTTT 1514
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| | |||| |||||||||| |||||||| | ||| ||| |||||||| ||||
Sbjct 1513 TTTCAACCTTCCATCACGGTACTTCTTCACTATTGATCACTCATGAGTATTTAACCTTAC 1454
Query 370 AGGATGGTCC 379
| | ||||||
Sbjct 1453 AAGGTGGTCC 1444
>seq741
Length=5617
Score = 77.0 bits (84), Expect = 8e-12
Identities = 62/75 (83%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
|||||| |||||||||||||||||| || | |||||||||| | || | || | || |||
Sbjct 3464 CTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTAAGGCTT 3523
Query 368 GGAGGATGGTCCCCC 382
|||| |||||||||
Sbjct 3524 AGAGGGTGGTCCCCC 3538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241350748800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |