Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq14270 217 4e-54 seq7305 210 5e-52 seq17518 105 2e-20 seq5234 95.1 3e-17 seq3589 80.6 7e-13 seq741 77.0 8e-12 >seq14270 Length=41679 Score = 217 bits (240), Expect = 4e-54 Identities = 310/420 (74%), Gaps = 26/420 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 1211 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 1155 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 1154 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 1099 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 1098 GACAATT-GCCCTCTGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 1041 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| |||| |||| ||| Sbjct 1040 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 987 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| ||||||||| || |||||||||| | ||||||||||||||| | Sbjct 986 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 929 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||| Sbjct 928 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 870 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 869 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 810 >seq7305 Length=44007 Score = 210 bits (232), Expect = 5e-52 Identities = 312/422 (74%), Gaps = 23/422 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 20697 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 20641 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 20640 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 20585 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 20584 GACAATT-GCCCTCTGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 20527 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAA-AGGTACGCAGTCACCCAACAAAG 245 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 20526 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACGAGGCACGCGGTCAGACGCCC--G 20470 Query 246 TGGGC-----TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 ||||| |||||||||||| || |||||||||| | ||||||||||||||| | Sbjct 20469 TGGGCCTCCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 20410 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||| Sbjct 20409 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 20351 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGAC-AAAGTTTC-TCGTGCTCCGTCCTACT 418 |||||||| | | |||||| | ||||| || |||| | ||||| || | ||||| Sbjct 20350 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGAGTTCCACCGTGCCCCATGCTACT 20291 Query 419 CG 420 || Sbjct 20290 CG 20289 >seq17518 Length=15840 Score = 105 bits (116), Expect = 2e-20 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347 ||||||||| | |||||||||||| || |||||||||||||||| ||||||||||||| Sbjct 13931 TCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTC 13989 Query 348 AGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGC 407 | ||| |||||||||||||| | | |||||| | ||||| || || | ||||| Sbjct 13990 ACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGC 14049 Query 408 TCCGTCCTACTCG 420 || | |||||| Sbjct 14050 CCCATGTTACTCG 14062 >seq5234 Length=25424 Score = 95.1 bits (104), Expect = 3e-17 Identities = 88/111 (79%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 |||| ||||| | ||||||||||||||| | ||||| ||||| || |||||||||| Sbjct 14591 TACGATTTCATGTTCTATTTCACTCCCCGAT---GGGTTTTTTTCACCCCTCCCTCACGG 14647 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 | ||| | | |||||||| | ||| |||||||||||||| | | |||||| Sbjct 14648 TCCTACTGCGCTATCGGTTACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 14698 >seq3589 Length=12208 Score = 80.6 bits (88), Expect = 7e-13 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||||||||| | ||| | ||||| | ||||||||||||| | | || || | Sbjct 1570 CTCCCACTGCTTTTGGTCAT--GATTTCATGTTCTATTTCACTCCTCAAT-GAGGTTTTT 1514 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| | |||| |||||||||| |||||||| | ||| ||| |||||||| |||| Sbjct 1513 TTTCAACCTTCCATCACGGTACTTCTTCACTATTGATCACTCATGAGTATTTAACCTTAC 1454 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 1453 AAGGTGGTCC 1444 >seq741 Length=5617 Score = 77.0 bits (84), Expect = 8e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| |||||||||||||||||| || | |||||||||| | || | || | || ||| Sbjct 3464 CTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTAAGGCTT 3523 Query 368 GGAGGATGGTCCCCC 382 |||| ||||||||| Sbjct 3524 AGAGGGTGGTCCCCC 3538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241350748800