Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq19444 226 6e-57
seq13392 224 2e-56
seq15957 178 3e-42
seq12299 131 3e-28
seq16277 123 5e-26
seq9389 123 5e-26
seq7170 109 1e-21
seq5229 75.2 2e-11
>seq19444
Length=5613
Score = 226 bits (250), Expect = 6e-57
Identities = 235/306 (77%), Gaps = 19/306 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 2016 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 2075
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 2076 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2135
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| ||||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 2136 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 2195
Query 181 GC-GATAAAT-CTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238
|| ||| | |||| ||| ||||| | | || | |||||||||
Sbjct 2196 GCGGATTCCTCCTTTTGTC--------------TCCTCAGCC--TACGGGGTATTAGCAG 2239
Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298
|||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||
Sbjct 2240 CCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCC 2298
Query 299 GCCACT 304
||||||
Sbjct 2299 GCCACT 2304
>seq13392
Length=67015
Score = 224 bits (248), Expect = 2e-56
Identities = 234/305 (77%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 55948 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 56007
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 56008 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 56067
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| ||||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 56068 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 56127
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 56128 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 56171
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 56172 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 56230
Query 300 CCACT 304
|||||
Sbjct 56231 CCACT 56235
>seq15957
Length=15107
Score = 178 bits (196), Expect = 3e-42
Identities = 195/257 (76%), Gaps = 18/257 (7%)
Strand=Plus/Minus
Query 49 TGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGT 108
|| |||||||||||||||||||||||||||||||||| |||||| | ||| |||||| |
Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499
Query 109 CCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGA 168
|| ||||| |||| ||| |||||| ||||||| ||||||||||| |||||| | |||||
Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGA 1439
Query 169 GCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGC 227
|||| || | || ||| || || ||| ||||| | | || |
Sbjct 1438 GCCCCTCCTCGGGCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGG 1395
Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287
||||||||| |||||||| ||| |||| ||| || |||||||| || ||| ||||
Sbjct 1394 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 1336
Query 288 CTCACCCGTCCGCCACT 304
|||||||||||||||||
Sbjct 1335 CTCACCCGTCCGCCACT 1319
>seq12299
Length=4959
Score = 131 bits (144), Expect = 3e-28
Identities = 122/154 (79%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| |||| ||||||
Sbjct 3108 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCC 3167
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 3168 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 3227
Query 127 CTTGGT-GGGCTATTATCTCACCAACTACCTAAT 159
|||||| | || ||| || ||||||||||||||
Sbjct 3228 CTTGGTCAGCCTTTTACCTGACCAACTACCTAAT 3261
>seq16277
Length=26332
Score = 123 bits (136), Expect = 5e-26
Identities = 115/146 (79%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67
|||||||| ||| | ||||||| | || |||||||||||||||||||||||||
Sbjct 22167 CTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTA 22112
Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127
|| ||||||||||||||| |||| | | ||| |||||| | || | ||| |||| ||| |
Sbjct 22111 GGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTC 22052
Query 128 TTGGTGGGCTATTATCTCACCAACTA 153
|| || ||||||| ||||||||||
Sbjct 22051 TTCGTAAGCTATTACGTCACCAACTA 22026
>seq9389
Length=10134
Score = 123 bits (136), Expect = 5e-26
Identities = 115/146 (79%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67
|||||||| ||| | ||||||| | || |||||||||||||||||||||||||
Sbjct 499 CTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTA 554
Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127
|| ||||||||||||||| |||| | | ||| |||||| | || | ||| |||| ||| |
Sbjct 555 GGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTC 614
Query 128 TTGGTGGGCTATTATCTCACCAACTA 153
|| || ||||||| ||||||||||
Sbjct 615 TTCGTAAGCTATTACGTCACCAACTA 640
>seq7170
Length=20343
Score = 109 bits (120), Expect = 1e-21
Identities = 81/95 (85%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| |||| |||||||
Sbjct 20334 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCAGGAGTCC 20275
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101
||||||||||||||||||| |||||| | ||| ||
Sbjct 20274 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 20240
>seq5229
Length=23025
Score = 75.2 bits (82), Expect = 2e-11
Identities = 73/93 (78%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68
|| ||| || |||| ||| |||| ||| || ||| ||||||||| ||| ||| || ||
Sbjct 12366 TGGATCGGGATTTCGCCCCTTGTCCAAAATTCCCGACTGCTGCCCCCCACGGGATTC-GG 12308
Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101
|| |||||||||||||| |||||| | ||| ||
Sbjct 12307 GCTGTGTCTCAGTCCCAGTGTGGCTGATCATCC 12275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998199571200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |