Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq19444 226 6e-57 seq13392 224 2e-56 seq15957 178 3e-42 seq12299 131 3e-28 seq16277 123 5e-26 seq9389 123 5e-26 seq7170 109 1e-21 seq5229 75.2 2e-11 >seq19444 Length=5613 Score = 226 bits (250), Expect = 6e-57 Identities = 235/306 (77%), Gaps = 19/306 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 2016 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 2075 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 2076 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2135 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||||||| ||||||||||| |||||| | ||||||||| || | Sbjct 2136 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 2195 Query 181 GC-GATAAAT-CTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 || ||| | |||| ||| ||||| | | || | ||||||||| Sbjct 2196 GCGGATTCCTCCTTTTGTC--------------TCCTCAGCC--TACGGGGTATTAGCAG 2239 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||| Sbjct 2240 CCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCC 2298 Query 299 GCCACT 304 |||||| Sbjct 2299 GCCACT 2304 >seq13392 Length=67015 Score = 224 bits (248), Expect = 2e-56 Identities = 234/305 (77%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 55948 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 56007 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 56008 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 56067 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||||||| ||||||||||| |||||| | ||||||||| || | Sbjct 56068 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 56127 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 56128 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 56171 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 56172 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 56230 Query 300 CCACT 304 ||||| Sbjct 56231 CCACT 56235 >seq15957 Length=15107 Score = 178 bits (196), Expect = 3e-42 Identities = 195/257 (76%), Gaps = 18/257 (7%) Strand=Plus/Minus Query 49 TGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGT 108 || |||||||||||||||||||||||||||||||||| |||||| | ||| |||||| | Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499 Query 109 CCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGA 168 || ||||| |||| ||| |||||| ||||||| ||||||||||| |||||| | ||||| Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGA 1439 Query 169 GCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGC 227 |||| || | || ||| || || ||| ||||| | | || | Sbjct 1438 GCCCCTCCTCGGGCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGG 1395 Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 1394 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 1336 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 1335 CTCACCCGTCCGCCACT 1319 >seq12299 Length=4959 Score = 131 bits (144), Expect = 3e-28 Identities = 122/154 (79%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| |||| |||||| Sbjct 3108 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCC 3167 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 3168 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 3227 Query 127 CTTGGT-GGGCTATTATCTCACCAACTACCTAAT 159 |||||| | || ||| || |||||||||||||| Sbjct 3228 CTTGGTCAGCCTTTTACCTGACCAACTACCTAAT 3261 >seq16277 Length=26332 Score = 123 bits (136), Expect = 5e-26 Identities = 115/146 (79%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67 |||||||| ||| | ||||||| | || ||||||||||||||||||||||||| Sbjct 22167 CTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTA 22112 Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127 || ||||||||||||||| |||| | | ||| |||||| | || | ||| |||| ||| | Sbjct 22111 GGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTC 22052 Query 128 TTGGTGGGCTATTATCTCACCAACTA 153 || || ||||||| |||||||||| Sbjct 22051 TTCGTAAGCTATTACGTCACCAACTA 22026 >seq9389 Length=10134 Score = 123 bits (136), Expect = 5e-26 Identities = 115/146 (79%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67 |||||||| ||| | ||||||| | || ||||||||||||||||||||||||| Sbjct 499 CTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAGTCTA 554 Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127 || ||||||||||||||| |||| | | ||| |||||| | || | ||| |||| ||| | Sbjct 555 GGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCATCGTC 614 Query 128 TTGGTGGGCTATTATCTCACCAACTA 153 || || ||||||| |||||||||| Sbjct 615 TTCGTAAGCTATTACGTCACCAACTA 640 >seq7170 Length=20343 Score = 109 bits (120), Expect = 1e-21 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| |||| ||||||| Sbjct 20334 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCAGGAGTCC 20275 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||||||||||||||||||| |||||| | ||| || Sbjct 20274 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 20240 >seq5229 Length=23025 Score = 75.2 bits (82), Expect = 2e-11 Identities = 73/93 (78%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68 || ||| || |||| ||| |||| ||| || ||| ||||||||| ||| ||| || || Sbjct 12366 TGGATCGGGATTTCGCCCCTTGTCCAAAATTCCCGACTGCTGCCCCCCACGGGATTC-GG 12308 Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 || |||||||||||||| |||||| | ||| || Sbjct 12307 GCTGTGTCTCAGTCCCAGTGTGGCTGATCATCC 12275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998199571200