Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq14270 224 2e-56 seq7305 223 8e-56 seq11129 131 4e-28 >seq14270 Length=41679 Score = 224 bits (248), Expect = 2e-56 Identities = 302/410 (74%), Gaps = 19/410 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1828 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1769 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC--GTCACACGCTACTCATGCC 118 ||||||||| | | |||| | | |||||| |||| || || |||||| ||| Sbjct 1768 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTAGCGTTACTCAAGCC 1709 Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || ||||| || | || | ||| ||||||| || | Sbjct 1708 GACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTCACT-CTAAGG 1653 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 || ||||||||||||| | | ||| | ||||||||||||| ||| |||| Sbjct 1652 CGGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA- 1597 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 1596 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 1538 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||| Sbjct 1537 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACT 1478 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1477 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1428 >seq7305 Length=44007 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 21313 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 21254 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 21253 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 21194 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | || | ||| ||||||| || | | Sbjct 21193 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTCACT-CTAAGGC 21138 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 21137 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 21082 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 21081 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 21023 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 21022 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 20963 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 20962 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 20914 >seq11129 Length=7639 Score = 131 bits (144), Expect = 4e-28 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | | | | | || | | | || || Sbjct 4826 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CGTCTTTGACGTAAGAGCGTTCGATCA 4769 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||| |||||| | || ||||| || | ||||| Sbjct 4768 GTGAGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAACCTTCTAGCTGTCTC 4709 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 || | | || ||||| ||||||| || ||||||| |||||||| ||||| ||| Sbjct 4708 TACACCCCTACCCCCTTTATCACTGAGCGGTCATTTAGGGGTCTTAGCTGGTGATCCGGG 4649 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 4648 TTGTTTCCCTCTCG 4635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177363596800