Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq14270 224 2e-56
seq7305 223 8e-56
seq11129 131 4e-28
>seq14270
Length=41679
Score = 224 bits (248), Expect = 2e-56
Identities = 302/410 (74%), Gaps = 19/410 (5%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 1828 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1769
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC--GTCACACGCTACTCATGCC 118
||||||||| | | |||| | | |||||| |||| || || |||||| |||
Sbjct 1768 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTAGCGTTACTCAAGCC 1709
Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACA 176
||||||| || ||| || ||||| || | || | ||| ||||||| || |
Sbjct 1708 GACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTCACT-CTAAGG 1653
Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230
|| ||||||||||||| | | ||| | ||||||||||||| ||| ||||
Sbjct 1652 CGGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA- 1597
Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290
|||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||
Sbjct 1596 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 1538
Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350
|| |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||
Sbjct 1537 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACT 1478
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 1477 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1428
>seq7305
Length=44007
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 21313 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 21254
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 21253 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 21194
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || | || | ||| ||||||| || | |
Sbjct 21193 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTCACT-CTAAGGC 21138
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | | ||| | ||||||||||||| ||| |||| |
Sbjct 21137 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 21082
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 21081 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 21023
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 21022 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 20963
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 20962 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 20914
>seq11129
Length=7639
Score = 131 bits (144), Expect = 4e-28
Identities = 147/194 (76%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||||||| ||| |||| |||||| | | | | | || | | | || ||
Sbjct 4826 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CGTCTTTGACGTAAGAGCGTTCGATCA 4769
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||||||||||||||||||||||||| ||| |||||| | || ||||| || | |||||
Sbjct 4768 GTGAGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAACCTTCTAGCTGTCTC 4709
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
|| | | || ||||| ||||||| || ||||||| |||||||| ||||| |||
Sbjct 4708 TACACCCCTACCCCCTTTATCACTGAGCGGTCATTTAGGGGTCTTAGCTGGTGATCCGGG 4649
Query 387 CTGTTTCCCTCTCG 400
|||||||||||||
Sbjct 4648 TTGTTTCCCTCTCG 4635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177363596800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |