Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq19748 113 8e-23 seq5784 104 4e-20 >seq19748 Length=9024 Score = 113 bits (124), Expect = 8e-23 Identities = 185/265 (70%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGGAGAGTCC 68 ||||| |||| |||||| | || || ||||||| ||| ||| |||||||| || || Sbjct 6896 TGTCCAAGGGGATGTGTGAGAGTTGGGCAAAATGGCAATATGACTTGTTGGGGGGATTCA 6837 Query 69 GACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACC 128 | ||| | || ||||||| | || || || | |||||||| |||||||||||||| Sbjct 6836 TATCCGGCTATTCAAGTCGGGTCGTGTGGGGTTCACATTGGTGATCGGACCTTGGTTACC 6777 Query 129 GGGTCGGTTTATCAAG--GGGCCCCACATGGGTTCTTCTTAG-TAAATAACAACAAAAAG 185 ||||||| || ||||| ||| | || | ||| || | ||| |||| | ||| Sbjct 6776 GGGTCGGCTTTTCAAGGTGGGACGCAAA------CTTTTTTGTTAACAAACAGTGATAAG 6723 Query 186 GATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTG 245 | | ||||| | || || | || | ||| ||| ||||| ||||| || ||||| Sbjct 6722 GTAGAACAAAAGTGCAATTTTATTAAAGTGGATACTCCGGATGAGTTTTCCGGGTTTGTA 6663 Query 246 CAATCTGGATGCTGTGTGGAGATCT 270 || || || |||| ||| || |||| Sbjct 6662 CAGTCGGGTTGCTTTGTTGAAATCT 6638 >seq5784 Length=19204 Score = 104 bits (114), Expect = 4e-20 Identities = 194/278 (70%), Gaps = 18/278 (6%) Strand=Plus/Minus Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGGAGAGTC- 67 ||||| ||| | ||||| | || || || |||| ||||| | || ||||| ||| Sbjct 17097 TGTCCGAGGTCTTGTGTGGCAGTAGGGCAAGATGGTAATTTAACATCTTGGGATCAGTAT 17038 Query 68 CGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACC-----TTG 122 | || || ||| |||| || |||| || || || ||||| |||||| ||| Sbjct 17037 CTGCCGGACGGTTCAAGTAGGGACATGTGGGGTTGACCTTGG----GGGACCGGGTGTTG 16982 Query 123 GTTACCGGGTCGGTTTATCAAGGGGCCCCACATG-GGTTCTTCTTA-GTAAATAACAACA 180 || ||||| || | || || || || || || | |||| | | | | ||| ||| | | Sbjct 16981 GTCACCGGTTCAGCCTACCAGGGTGCACCGCAAGCGGTTTATGTAATGGAAAAAACGA-A 16923 Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240 ||||| |||||| ||||||| ||| | |||||||||||||| |||||||| | Sbjct 16922 CCAAGGA----CAAAATGGTAAATTTGTAAAAGTCGATGTTCCTGATGAGTTTTCTGGCT 16867 Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTT 278 ||||||||||||| ||| || ||||| | ||||||| Sbjct 16866 TTGTGCAATCTGGTTGCCTAGTCGAGAT-TTAAATTTT 16830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918215631200