Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001756.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq19748 113 8e-23
seq5784 104 4e-20
>seq19748
Length=9024
Score = 113 bits (124), Expect = 8e-23
Identities = 185/265 (70%), Gaps = 9/265 (3%)
Strand=Plus/Minus
Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGGAGAGTCC 68
||||| |||| |||||| | || || ||||||| ||| ||| |||||||| || ||
Sbjct 6896 TGTCCAAGGGGATGTGTGAGAGTTGGGCAAAATGGCAATATGACTTGTTGGGGGGATTCA 6837
Query 69 GACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACC 128
| ||| | || ||||||| | || || || | |||||||| ||||||||||||||
Sbjct 6836 TATCCGGCTATTCAAGTCGGGTCGTGTGGGGTTCACATTGGTGATCGGACCTTGGTTACC 6777
Query 129 GGGTCGGTTTATCAAG--GGGCCCCACATGGGTTCTTCTTAG-TAAATAACAACAAAAAG 185
||||||| || ||||| ||| | || | ||| || | ||| |||| | |||
Sbjct 6776 GGGTCGGCTTTTCAAGGTGGGACGCAAA------CTTTTTTGTTAACAAACAGTGATAAG 6723
Query 186 GATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTG 245
| | ||||| | || || | || | ||| ||| ||||| ||||| || |||||
Sbjct 6722 GTAGAACAAAAGTGCAATTTTATTAAAGTGGATACTCCGGATGAGTTTTCCGGGTTTGTA 6663
Query 246 CAATCTGGATGCTGTGTGGAGATCT 270
|| || || |||| ||| || ||||
Sbjct 6662 CAGTCGGGTTGCTTTGTTGAAATCT 6638
>seq5784
Length=19204
Score = 104 bits (114), Expect = 4e-20
Identities = 194/278 (70%), Gaps = 18/278 (6%)
Strand=Plus/Minus
Query 9 TGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGGAGAGTC- 67
||||| ||| | ||||| | || || || |||| ||||| | || ||||| |||
Sbjct 17097 TGTCCGAGGTCTTGTGTGGCAGTAGGGCAAGATGGTAATTTAACATCTTGGGATCAGTAT 17038
Query 68 CGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACC-----TTG 122
| || || ||| |||| || |||| || || || ||||| |||||| |||
Sbjct 17037 CTGCCGGACGGTTCAAGTAGGGACATGTGGGGTTGACCTTGG----GGGACCGGGTGTTG 16982
Query 123 GTTACCGGGTCGGTTTATCAAGGGGCCCCACATG-GGTTCTTCTTA-GTAAATAACAACA 180
|| ||||| || | || || || || || || | |||| | | | | ||| ||| | |
Sbjct 16981 GTCACCGGTTCAGCCTACCAGGGTGCACCGCAAGCGGTTTATGTAATGGAAAAAACGA-A 16923
Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240
||||| |||||| ||||||| ||| | |||||||||||||| |||||||| |
Sbjct 16922 CCAAGGA----CAAAATGGTAAATTTGTAAAAGTCGATGTTCCTGATGAGTTTTCTGGCT 16867
Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAAATTTT 278
||||||||||||| ||| || ||||| | |||||||
Sbjct 16866 TTGTGCAATCTGGTTGCCTAGTCGAGAT-TTAAATTTT 16830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918215631200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |