Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq19444 122 7e-26 seq14253 122 7e-26 seq9535 118 9e-25 seq18754 86.0 5e-15 seq8547 77.0 3e-12 >seq19444 Length=5613 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 1117 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 1176 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 1177 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1236 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 1237 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1276 >seq14253 Length=20855 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 19939 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 19998 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 19999 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 20058 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 20059 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 20098 >seq9535 Length=27949 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 13016 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 12958 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| ||||||| |||||| Sbjct 12957 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAAGGCCAT 12898 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 12897 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 12858 >seq18754 Length=8824 Score = 86.0 bits (94), Expect = 5e-15 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| | ||||||| | | | ||| ||| ||| ||||||| | ||||| Sbjct 8161 CGAGTTGCAGCTTGCAATCCGAATTGAGGATGGGTTTT-TGGAGTTAGCTCACTCTCGCA 8219 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| |||| ||| ||||||||| ||||||| ||| | |||||||| || Sbjct 8220 GGATCGCGACCCTTTGTCCCGACCATTGTAGCACGTGTGTCTCCCAAGGCATAAGGGGCA 8279 Query 121 TGAGGACTTGACGTCATCC 139 ||| ||||||||||||||| Sbjct 8280 TGATGACTTGACGTCATCC 8298 >seq8547 Length=17376 Score = 77.0 bits (84), Expect = 3e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||| || |||| ||||||||||||||||||||||||||||||| | |||| Sbjct 16879 GCCCAGCCCATAAAGGTCATGCGGACTTGACGTCATCCCCACCTTCCTCCGGTATATCAC 16820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415919097750