Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq19444 122 7e-26
seq14253 122 7e-26
seq9535 118 9e-25
seq18754 86.0 5e-15
seq8547 77.0 3e-12
>seq19444
Length=5613
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 1117 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 1176
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 1177 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1236
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 1237 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1276
>seq14253
Length=20855
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 19939 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 19998
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 19999 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 20058
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 20059 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 20098
>seq9535
Length=27949
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 13016 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 12958
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||| ||||||
Sbjct 12957 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAAGGCCAT 12898
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 12897 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 12858
>seq18754
Length=8824
Score = 86.0 bits (94), Expect = 5e-15
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||| | ||||||| | | | ||| ||| ||| ||||||| | |||||
Sbjct 8161 CGAGTTGCAGCTTGCAATCCGAATTGAGGATGGGTTTT-TGGAGTTAGCTCACTCTCGCA 8219
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
|| | ||| |||| ||| ||||||||| ||||||| ||| | |||||||| ||
Sbjct 8220 GGATCGCGACCCTTTGTCCCGACCATTGTAGCACGTGTGTCTCCCAAGGCATAAGGGGCA 8279
Query 121 TGAGGACTTGACGTCATCC 139
||| |||||||||||||||
Sbjct 8280 TGATGACTTGACGTCATCC 8298
>seq8547
Length=17376
Score = 77.0 bits (84), Expect = 3e-12
Identities = 53/60 (88%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|||| ||||||| || |||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 16879 GCCCAGCCCATAAAGGTCATGCGGACTTGACGTCATCCCCACCTTCCTCCGGTATATCAC 16820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415919097750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |