Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq19444 158 2e-36
seq14253 152 9e-35
seq13392 150 3e-34
seq12299 105 1e-20
>seq19444
Length=5613
Score = 158 bits (174), Expect = 2e-36
Identities = 206/285 (72%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 1670 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 1729
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 1730 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 1789
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | | ||||||||| | ||| || | |||||
Sbjct 1790 CTTGGTAGTTTCCACCGCCTGTCCAGAGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 1849
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 1850 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 1909
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 1910 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 1954
>seq14253
Length=20855
Score = 152 bits (168), Expect = 9e-35
Identities = 206/286 (72%), Gaps = 1/286 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTT-CGCCACTGGTGTTCCT 64
||||||| ||||| |||||| | | |||||| || || |||| |||||||| |
Sbjct 20492 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTTCGCCGTTGGTGTTCTT 20551
Query 65 CCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAA 124
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| |
Sbjct 20552 TCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCA 20611
Query 125 GAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184
| |||||| | || | | ||||||||| | ||| || | |||||
Sbjct 20612 GCTTGGTAGTTTCCACCGCCTGTCCAGAGTTGAGCCCTGGGATTTGACGGCGGACTTAAA 20671
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| |||||| | |||||| |||||| | |||||||||||||||| ||| |||||
Sbjct 20672 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATT 20731
Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 20732 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 20777
>seq13392
Length=67015
Score = 150 bits (166), Expect = 3e-34
Identities = 205/285 (72%), Gaps = 1/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 55603 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 55662
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || | |||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 55663 CCGATCT-TACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 55721
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | | ||||||||| | ||| || | |||||
Sbjct 55722 CTTGGTAGTTTCCACCGCCTGTCCAGAGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 55781
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 55782 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 55841
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 55842 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 55886
>seq12299
Length=4959
Score = 105 bits (116), Expect = 1e-20
Identities = 82/98 (84%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|||||||| ||||||||| |||| | | |||| | ||| |||||| || ||| |||||
Sbjct 2936 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACC 2995
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||||||||||||||| ||||||||| ||||| ||||||
Sbjct 2996 GCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 3033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828638817825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |