Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq7305 268 1e-69 seq17268 264 2e-68 seq17582 118 2e-24 seq1417 114 2e-23 seq16419 77.0 5e-12 seq9121 75.2 2e-11 >seq7305 Length=44007 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 22709 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 22650 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 22649 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 22590 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 22589 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 22530 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 22529 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 22470 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 22469 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 22437 >seq17268 Length=15521 Score = 264 bits (292), Expect = 2e-68 Identities = 216/261 (83%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74 || ||||||| |||||| |||||| ||| |||| ||| |||||| | | | | ||| Sbjct 12381 GCCTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGC 12440 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 | | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || ||| Sbjct 12441 ACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCC 12500 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||||| || |||||||| |||||| ||||||||||||||| |||||||||||||| Sbjct 12501 TCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACC 12560 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| || ||||||||||||||||||||||||||||| || |||| |||||||| Sbjct 12561 CAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCA 12620 Query 255 GGATGAGACGAGCCGACATCG 275 || | || |||||||||||| Sbjct 12621 GGTGGCGAAGAGCCGACATCG 12641 >seq17582 Length=9214 Score = 118 bits (130), Expect = 2e-24 Identities = 126/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 404 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 463 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 464 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 523 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGA 167 | ||| || ||||||||| || |||||||| | |||| ||| Sbjct 524 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCAGATATGGA 568 >seq1417 Length=13722 Score = 114 bits (126), Expect = 2e-23 Identities = 118/153 (77%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74 || ||||||| |||||| |||||| ||| |||| ||| |||||| | | | | ||| Sbjct 3850 GCCTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGC 3909 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 | | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || ||| Sbjct 3910 ACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCC 3969 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGA 167 |||||| || |||||||| | |||| ||| Sbjct 3970 TCTCAATGCTCTAACGCCCACACCAGATATGGA 4002 >seq16419 Length=10639 Score = 77.0 bits (84), Expect = 5e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 209 CTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCC 268 |||||||||| ||||| |||||||||||| || |||| |||||||||| | | ||||| Sbjct 2613 CTTTAATGGGTGAACAACCCAACCCTTGGAACATACTACAGCCCCAGGTGGCAAAGAGCC 2672 Query 269 GACATCG 275 ||||||| Sbjct 2673 GACATCG 2679 >seq9121 Length=9892 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||| ||| || |||||||||||||||| |||||||||||| ||| Sbjct 1470 CTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACC 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780648152700