Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq7305 268 1e-69
seq17268 264 2e-68
seq17582 118 2e-24
seq1417 114 2e-23
seq16419 77.0 5e-12
seq9121 75.2 2e-11
>seq7305
Length=44007
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 22709 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 22650
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 22649 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 22590
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 22589 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 22530
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 22529 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 22470
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 22469 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 22437
>seq17268
Length=15521
Score = 264 bits (292), Expect = 2e-68
Identities = 216/261 (83%), Gaps = 1/261 (0%)
Strand=Plus/Plus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74
|| ||||||| |||||| |||||| ||| |||| ||| |||||| | | | | |||
Sbjct 12381 GCCTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGC 12440
Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134
| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || |||
Sbjct 12441 ACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCC 12500
Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194
|||||| || |||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 12501 TCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACC 12560
Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254
|||||| ||| || ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 12561 CAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCA 12620
Query 255 GGATGAGACGAGCCGACATCG 275
|| | || ||||||||||||
Sbjct 12621 GGTGGCGAAGAGCCGACATCG 12641
>seq17582
Length=9214
Score = 118 bits (130), Expect = 2e-24
Identities = 126/165 (76%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 404 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 463
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 464 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 523
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGA 167
| ||| || ||||||||| || |||||||| | |||| |||
Sbjct 524 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCAGATATGGA 568
>seq1417
Length=13722
Score = 114 bits (126), Expect = 2e-23
Identities = 118/153 (77%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74
|| ||||||| |||||| |||||| ||| |||| ||| |||||| | | | | |||
Sbjct 3850 GCCTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGC 3909
Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134
| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || |||
Sbjct 3910 ACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCC 3969
Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGA 167
|||||| || |||||||| | |||| |||
Sbjct 3970 TCTCAATGCTCTAACGCCCACACCAGATATGGA 4002
>seq16419
Length=10639
Score = 77.0 bits (84), Expect = 5e-12
Identities = 57/67 (85%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 209 CTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCC 268
|||||||||| ||||| |||||||||||| || |||| |||||||||| | | |||||
Sbjct 2613 CTTTAATGGGTGAACAACCCAACCCTTGGAACATACTACAGCCCCAGGTGGCAAAGAGCC 2672
Query 269 GACATCG 275
|||||||
Sbjct 2673 GACATCG 2679
>seq9121
Length=9892
Score = 75.2 bits (82), Expect = 2e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
||||||||||||| ||| || |||||||||||||||| |||||||||||| |||
Sbjct 1470 CTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACC 1417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780648152700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |