Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq13392 269 6e-70 seq19444 264 3e-68 seq15957 187 6e-45 seq12299 159 8e-37 seq7170 131 4e-28 seq16277 127 5e-27 seq9389 127 5e-27 seq5229 100 7e-19 seq6365 73.4 1e-10 >seq13392 Length=67015 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 55923 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 55982 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 55983 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 56042 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || |||||| | ||||||||| Sbjct 56043 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGC 56102 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 56103 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 56151 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 56152 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 56209 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 56210 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 56252 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 56253 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 56296 >seq19444 Length=5613 Score = 264 bits (292), Expect = 3e-68 Identities = 301/404 (75%), Gaps = 29/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 1991 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 2050 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 2051 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 2110 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || |||||| | ||||||||| Sbjct 2111 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGC 2170 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| | | ||| || || |||| |||| Sbjct 2171 TAATCAGACGCGAGCCCCTCC--TCG-----GGC-----GGATTCCTCCTTTTGTCTCCT 2218 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 2219 CAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 2278 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 2279 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 2321 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 2322 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 2365 >seq15957 Length=15107 Score = 187 bits (206), Expect = 6e-45 Identities = 241/331 (73%), Gaps = 30/331 (9%) Strand=Plus/Minus Query 84 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGA 143 || ||||||||||||||||| |||||||||||| |||||||||||| |||||||||| || Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499 Query 144 CCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGG 203 ||||||| |||| |||||| ||| || |||||| | |||||||||||||| | | Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGA 1439 Query 204 GTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGT 263 | | ||| || | || ||| ||| |||| || | | | || | ||| Sbjct 1438 GCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGT 1392 Query 264 ATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCA 323 |||||| |||||||||| ||| | ||||||| ||||| ||| | | ||||||| Sbjct 1391 ATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCA 1332 Query 324 CCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATG 383 ||||||||||||| ||| || || |||| |||| ||||||||||| Sbjct 1331 CCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGCATG 1289 Query 384 TGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||| || ||||||||||||||| ||||| Sbjct 1288 TGTTAAGCATGCCGCCAGCGTTCATCCTGAG 1258 >seq12299 Length=4959 Score = 159 bits (176), Expect = 8e-37 Identities = 153/194 (79%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 3068 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 3127 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| |||| |||||| || |||||||||||| |||| Sbjct 3128 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAG 3187 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCC-ATTACCCC 180 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 3188 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTTACCTG 3247 Query 181 GCCAACTAGCTAAT 194 ||||||| ||||| Sbjct 3248 ACCAACTACCTAAT 3261 >seq7170 Length=20343 Score = 131 bits (144), Expect = 4e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33 CGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCG 92 |||| || |||| ||| ||||| |||||||||| ||| |||||||||||||||| |||| Sbjct 20343 CGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCG 20284 Query 93 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149 ||||||| || |||||||||||| |||||||||||| |||||| ||||||||| Sbjct 20283 CAGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAGCT 20227 >seq16277 Length=26332 Score = 127 bits (140), Expect = 5e-27 Identities = 119/151 (79%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 ||| |||||||| | ||| ||||||| | ||| |||||||||||||||||||||| Sbjct 22171 ATGACTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAG 22116 Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | ||||||||||| |||||||| ||| |||||||||| |||||| || |||| | Sbjct 22115 TCTAGGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCAT 22056 Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAG 189 || || || || ||||| | |||||||| Sbjct 22055 CGTCTTCGTAAGCTATTACGTCACCAACTAG 22025 >seq9389 Length=10134 Score = 127 bits (140), Expect = 5e-27 Identities = 119/151 (79%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 ||| |||||||| | ||| ||||||| | ||| |||||||||||||||||||||| Sbjct 495 ATGACTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAG 550 Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||| | ||||||||||| |||||||| ||| |||||||||| |||||| || |||| | Sbjct 551 TCTAGGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCAT 610 Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAG 189 || || || || ||||| | |||||||| Sbjct 611 CGTCTTCGTAAGCTATTACGTCACCAACTAG 641 >seq5229 Length=23025 Score = 100 bits (110), Expect = 7e-19 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || | || ||| || || ||||| |||| ||| |||||| | Sbjct 12390 CCTTCTTCACTCACGCGATATTGTTGGATCGGGATTTCGCCCCTTGTCCAAAATTCCCGA 12331 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 |||||||| ||| ||| || || | |||||||||| |||||||||||| |||||| Sbjct 12330 CTGCTGCCCCCCACGGGATTCGGG-CTGTGTCTCAGTCCCAGTGTGGCTGATCATCC 12275 >seq6365 Length=16597 Score = 73.4 bits (80), Expect = 1e-10 Identities = 76/99 (77%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153 || |||| || |||||||||||| |||||||||||| |||||| |||||||||| | Sbjct 15570 AGCAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGC 15511 Query 154 ATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192 ||| | || ||| ||| ||||| ||||||| ||| Sbjct 15510 ATC--AGGCTTGGTCAGCCTTTACCTGACCAACTACCTA 15474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222154603200