Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq13392 269 6e-70
seq19444 264 3e-68
seq15957 187 6e-45
seq12299 159 8e-37
seq7170 131 4e-28
seq16277 127 5e-27
seq9389 127 5e-27
seq5229 100 7e-19
seq6365 73.4 1e-10
>seq13392
Length=67015
Score = 269 bits (298), Expect = 6e-70
Identities = 303/404 (75%), Gaps = 30/404 (7%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||| | ||
Sbjct 55923 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 55982
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 55983 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 56042
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||||||| ||||||||| |||| |||||| ||| || |||||| | |||||||||
Sbjct 56043 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGC 56102
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
||||| | | | | ||| || | || ||| ||| |||| || |
Sbjct 56103 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 56151
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310
| | || | ||||||||| |||||||||| ||| | ||||||| ||||| |||
Sbjct 56152 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 56209
Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370
| | |||||||||||||||||||| ||| || || |||| |||
Sbjct 56210 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 56252
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 56253 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 56296
>seq19444
Length=5613
Score = 264 bits (292), Expect = 3e-68
Identities = 301/404 (75%), Gaps = 29/404 (7%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||| | ||
Sbjct 1991 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 2050
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2051 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 2110
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||||||| ||||||||| |||| |||||| ||| || |||||| | |||||||||
Sbjct 2111 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGC 2170
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
||||| | | | | ||| | | ||| || || |||| ||||
Sbjct 2171 TAATCAGACGCGAGCCCCTCC--TCG-----GGC-----GGATTCCTCCTTTTGTCTCCT 2218
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310
| || | ||||||||| |||||||||| ||| | ||||||| ||||| |||
Sbjct 2219 CAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 2278
Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370
| | |||||||||||||||||||| ||| || || |||| |||
Sbjct 2279 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 2321
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 2322 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 2365
>seq15957
Length=15107
Score = 187 bits (206), Expect = 6e-45
Identities = 241/331 (73%), Gaps = 30/331 (9%)
Strand=Plus/Minus
Query 84 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGA 143
|| ||||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||
Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499
Query 144 CCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGG 203
||||||| |||| |||||| ||| || |||||| | |||||||||||||| | |
Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGA 1439
Query 204 GTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGT 263
| | ||| || | || ||| ||| |||| || | | | || | |||
Sbjct 1438 GCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGT 1392
Query 264 ATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCA 323
|||||| |||||||||| ||| | ||||||| ||||| ||| | | |||||||
Sbjct 1391 ATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCA 1332
Query 324 CCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATG 383
||||||||||||| ||| || || |||| |||| |||||||||||
Sbjct 1331 CCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGCATG 1289
Query 384 TGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||| || ||||||||||||||| |||||
Sbjct 1288 TGTTAAGCATGCCGCCAGCGTTCATCCTGAG 1258
>seq12299
Length=4959
Score = 159 bits (176), Expect = 8e-37
Identities = 153/194 (79%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 3068 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 3127
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| |||| |||||| || |||||||||||| ||||
Sbjct 3128 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAG 3187
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCC-ATTACCCC 180
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 3188 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTTACCTG 3247
Query 181 GCCAACTAGCTAAT 194
||||||| |||||
Sbjct 3248 ACCAACTACCTAAT 3261
>seq7170
Length=20343
Score = 131 bits (144), Expect = 4e-28
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 33 CGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCG 92
|||| || |||| ||| ||||| |||||||||| ||| |||||||||||||||| ||||
Sbjct 20343 CGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCG 20284
Query 93 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149
||||||| || |||||||||||| |||||||||||| |||||| |||||||||
Sbjct 20283 CAGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAGCT 20227
>seq16277
Length=26332
Score = 127 bits (140), Expect = 5e-27
Identities = 119/151 (79%), Gaps = 4/151 (3%)
Strand=Plus/Minus
Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98
||| |||||||| | ||| ||||||| | ||| ||||||||||||||||||||||
Sbjct 22171 ATGACTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAG 22116
Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158
||| | ||||||||||| |||||||| ||| |||||||||| |||||| || |||| |
Sbjct 22115 TCTAGGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCAT 22056
Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAG 189
|| || || || ||||| | ||||||||
Sbjct 22055 CGTCTTCGTAAGCTATTACGTCACCAACTAG 22025
>seq9389
Length=10134
Score = 127 bits (140), Expect = 5e-27
Identities = 119/151 (79%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98
||| |||||||| | ||| ||||||| | ||| ||||||||||||||||||||||
Sbjct 495 ATGACTGCATCA----TTCGCTCATTGTGGGAAATTTTCCACTGCTGCCTCCCGTAGGAG 550
Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158
||| | ||||||||||| |||||||| ||| |||||||||| |||||| || |||| |
Sbjct 551 TCTAGGTCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTCGGACCAGTTACTGATCAT 610
Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAG 189
|| || || || ||||| | ||||||||
Sbjct 611 CGTCTTCGTAAGCTATTACGTCACCAACTAG 641
>seq5229
Length=23025
Score = 100 bits (110), Expect = 7e-19
Identities = 93/117 (79%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||||||| |||||| || | || ||| || || ||||| |||| ||| |||||| |
Sbjct 12390 CCTTCTTCACTCACGCGATATTGTTGGATCGGGATTTCGCCCCTTGTCCAAAATTCCCGA 12331
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136
|||||||| ||| ||| || || | |||||||||| |||||||||||| ||||||
Sbjct 12330 CTGCTGCCCCCCACGGGATTCGGG-CTGTGTCTCAGTCCCAGTGTGGCTGATCATCC 12275
>seq6365
Length=16597
Score = 73.4 bits (80), Expect = 1e-10
Identities = 76/99 (77%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153
|| |||| || |||||||||||| |||||||||||| |||||| |||||||||| |
Sbjct 15570 AGCAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGC 15511
Query 154 ATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192
||| | || ||| ||| ||||| ||||||| |||
Sbjct 15510 ATC--AGGCTTGGTCAGCCTTTACCTGACCAACTACCTA 15474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222154603200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |