Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq19444 329 1e-87 seq13392 329 1e-87 seq12299 255 2e-65 seq15957 147 7e-33 seq14253 138 3e-30 seq16277 120 9e-25 seq9389 120 9e-25 seq7170 113 1e-22 seq2870 86.0 2e-14 >seq19444 Length=5613 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| |||||| |||||||||||||| |||||||||| | Sbjct 2182 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 2123 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 2122 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 2063 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 2062 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 2003 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||| | || ||| | | | ||||| |||||||||| || ||| Sbjct 2002 AGGCCCACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 1943 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 1942 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 1883 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 1882 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 1841 >seq13392 Length=67015 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| |||||| |||||||||||||| |||||||||| | Sbjct 56114 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 56055 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 56054 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 55995 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 55994 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 55935 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||| | || ||| | | | ||||| |||||||||| || ||| Sbjct 55934 AGGCCCACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 55875 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 55874 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 55815 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 55814 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 55773 >seq12299 Length=4959 Score = 255 bits (282), Expect = 2e-65 Identities = 256/328 (78%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAAC-GGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || | Sbjct 3261 ATTAGGTAGTTGGTCAGGTAAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCG 3202 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| ||| |||||||||||| || ||||| |||| |||||||||||| Sbjct 3201 GATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCGCGGGGGGCAGCAGTGGG 3142 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC-- 344 |||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | Sbjct 3141 GAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAA 3082 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCC 402 | | | | |||||||||| || || | | ||| ||||| ||| ||||| |||||| Sbjct 3081 TGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCC 3022 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| Sbjct 3021 CCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATG 2962 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| |||||||||||| |||||| ||| Sbjct 2961 ACT-GGGCGTAAAGGGCACGTAGGCGGT 2935 >seq15957 Length=15107 Score = 147 bits (162), Expect = 7e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| |||||| |||||||||||||| |||||||||| | Sbjct 1440 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 1499 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||| || Sbjct 1500 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGTCA 1558 >seq14253 Length=20855 Score = 138 bits (152), Expect = 3e-30 Identities = 149/194 (77%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 309 GCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTC 368 |||||| | ||||| |||||||| | ||||||| |||||| | || ||| | | Sbjct 20855 GCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCATGAACTTCTTTTCCG 20796 Query 369 AAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426 || |||| |||||||||| || ||| |||| ||||||||| |||||||||||| Sbjct 20795 GAG-AAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCC 20737 Query 427 GCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGG 486 |||||||||| ||| || ||||||||||||||| | | |||||||||| || ||||| Sbjct 20736 GCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGG 20678 Query 487 TGGTTTCTTAAGTC 500 ||| || ||||||| Sbjct 20677 TGGCTTTTTAAGTC 20664 >seq16277 Length=26332 Score = 120 bits (132), Expect = 9e-25 Identities = 115/147 (78%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 173 CTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGAT 232 ||||||||| | |||| |||||| ||| ||| |||||||| | | | |||||| |||| Sbjct 22025 CTAGTTGGTGACGTAATAGCTTACGAAGACGATGATCAGTAACTGGTCCGAGAGGATGAT 22084 Query 233 CGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATAT 292 | | |||| ||| ||||||||||| | | ||||||||||||||||||||||| ||| | Sbjct 22085 CAGTCACACTGGGACTGAGACACGACCTAGACTCCTACGGGAGGCAGCAGTGGAAAATTT 22144 Query 293 TGCACAATGGGCAAAAGCCTGATGCAG 319 ||||||| || || |||||||| Sbjct 22145 CCCACAATGAGCGAA----TGATGCAG 22167 >seq9389 Length=10134 Score = 120 bits (132), Expect = 9e-25 Identities = 115/147 (78%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 173 CTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGAT 232 ||||||||| | |||| |||||| ||| ||| |||||||| | | | |||||| |||| Sbjct 641 CTAGTTGGTGACGTAATAGCTTACGAAGACGATGATCAGTAACTGGTCCGAGAGGATGAT 582 Query 233 CGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATAT 292 | | |||| ||| ||||||||||| | | ||||||||||||||||||||||| ||| | Sbjct 581 CAGTCACACTGGGACTGAGACACGACCTAGACTCCTACGGGAGGCAGCAGTGGAAAATTT 522 Query 293 TGCACAATGGGCAAAAGCCTGATGCAG 319 ||||||| || || |||||||| Sbjct 521 CCCACAATGAGCGAA----TGATGCAG 499 >seq7170 Length=20343 Score = 113 bits (124), Expect = 1e-22 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| |||||||||||| || |||||| |||| ||||||||||| Sbjct 20240 GGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCTGCGGGGGGCAGCAGTGG 20299 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| ||| ||||||||| |||||| ||| |||||| Sbjct 20300 GGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAA 20336 >seq2870 Length=11522 Score = 86.0 bits (94), Expect = 2e-14 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 || || ||||||||| | ||| ||| ||||||| |||||||||| |||||| | ||| Sbjct 11268 CGTGAAGCAGCAGTGAGAAATCTTGG-CAATGGGTGAAAGCCTGATCCAGCAATGTTGCG 11326 Query 330 TGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGG 385 |||| || ||||| | | | | |||||||| | || || || | || ||||| Sbjct 11327 TGAGTGAAGAAGGGCAATGCCACTTGTAAAGCTTTTTCGTCGAGTGTGCGATCATGACAA 11386 Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 ||| ||| | ||||| | |||| | | ||||||||||||| |||| || | ||||| Sbjct 11387 GACTCGAGAAT-AAGCCTTGACTAAGTTCTTGCCAGCAGCCGCAGTAAGACTTGGGGGG 11444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497299356800