Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq19444 329 1e-87
seq13392 329 1e-87
seq12299 255 2e-65
seq15957 147 7e-33
seq14253 138 3e-30
seq16277 120 9e-25
seq9389 120 9e-25
seq7170 113 1e-22
seq2870 86.0 2e-14
>seq19444
Length=5613
Score = 329 bits (364), Expect = 1e-87
Identities = 280/343 (82%), Gaps = 3/343 (1%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |
Sbjct 2182 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 2123
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 2122 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 2063
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 2062 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 2003
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
||||| |||||| | || ||| | | | ||||| |||||||||| || |||
Sbjct 2002 AGGCCCACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 1943
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 1942 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 1883
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || |||||||
Sbjct 1882 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 1841
>seq13392
Length=67015
Score = 329 bits (364), Expect = 1e-87
Identities = 280/343 (82%), Gaps = 3/343 (1%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |
Sbjct 56114 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 56055
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 56054 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 55995
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 55994 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 55935
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
||||| |||||| | || ||| | | | ||||| |||||||||| || |||
Sbjct 55934 AGGCCCACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 55875
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 55874 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 55815
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || |||||||
Sbjct 55814 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 55773
>seq12299
Length=4959
Score = 255 bits (282), Expect = 2e-65
Identities = 256/328 (78%), Gaps = 6/328 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAAC-GGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || |
Sbjct 3261 ATTAGGTAGTTGGTCAGGTAAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCG 3202
Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286
| ||||| |||||| ||| |||||||||||| || ||||| |||| ||||||||||||
Sbjct 3201 GATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCGCGGGGGGCAGCAGTGGG 3142
Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC-- 344
|||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| |
Sbjct 3141 GAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAA 3082
Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCC 402
| | | | |||||||||| || || | | ||| ||||| ||| ||||| ||||||
Sbjct 3081 TGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCC 3022
Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462
|||||||||| |||||||||||||||||||| ||| |||||| || ||| | ||||||
Sbjct 3021 CCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATG 2962
Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGT 490
||| |||||||||||| |||||| |||
Sbjct 2961 ACT-GGGCGTAAAGGGCACGTAGGCGGT 2935
>seq15957
Length=15107
Score = 147 bits (162), Expect = 7e-33
Identities = 104/119 (87%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |
Sbjct 1440 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 1499
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278
| |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||| ||
Sbjct 1500 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGTCA 1558
>seq14253
Length=20855
Score = 138 bits (152), Expect = 3e-30
Identities = 149/194 (77%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 309 GCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTC 368
|||||| | ||||| |||||||| | ||||||| |||||| | || ||| | |
Sbjct 20855 GCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCATGAACTTCTTTTCCG 20796
Query 369 AAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426
|| |||| |||||||||| || ||| |||| ||||||||| ||||||||||||
Sbjct 20795 GAG-AAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCC 20737
Query 427 GCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGG 486
|||||||||| ||| || ||||||||||||||| | | |||||||||| || |||||
Sbjct 20736 GCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGG 20678
Query 487 TGGTTTCTTAAGTC 500
||| || |||||||
Sbjct 20677 TGGCTTTTTAAGTC 20664
>seq16277
Length=26332
Score = 120 bits (132), Expect = 9e-25
Identities = 115/147 (78%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 173 CTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGAT 232
||||||||| | |||| |||||| ||| ||| |||||||| | | | |||||| ||||
Sbjct 22025 CTAGTTGGTGACGTAATAGCTTACGAAGACGATGATCAGTAACTGGTCCGAGAGGATGAT 22084
Query 233 CGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATAT 292
| | |||| ||| ||||||||||| | | ||||||||||||||||||||||| ||| |
Sbjct 22085 CAGTCACACTGGGACTGAGACACGACCTAGACTCCTACGGGAGGCAGCAGTGGAAAATTT 22144
Query 293 TGCACAATGGGCAAAAGCCTGATGCAG 319
||||||| || || ||||||||
Sbjct 22145 CCCACAATGAGCGAA----TGATGCAG 22167
>seq9389
Length=10134
Score = 120 bits (132), Expect = 9e-25
Identities = 115/147 (78%), Gaps = 4/147 (3%)
Strand=Plus/Minus
Query 173 CTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGAT 232
||||||||| | |||| |||||| ||| ||| |||||||| | | | |||||| ||||
Sbjct 641 CTAGTTGGTGACGTAATAGCTTACGAAGACGATGATCAGTAACTGGTCCGAGAGGATGAT 582
Query 233 CGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATAT 292
| | |||| ||| ||||||||||| | | ||||||||||||||||||||||| ||| |
Sbjct 581 CAGTCACACTGGGACTGAGACACGACCTAGACTCCTACGGGAGGCAGCAGTGGAAAATTT 522
Query 293 TGCACAATGGGCAAAAGCCTGATGCAG 319
||||||| || || ||||||||
Sbjct 521 CCCACAATGAGCGAA----TGATGCAG 499
>seq7170
Length=20343
Score = 113 bits (124), Expect = 1e-22
Identities = 83/97 (86%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285
|| ||||| |||||| ||| |||||||||||| || |||||| |||| |||||||||||
Sbjct 20240 GGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCTGCGGGGGGCAGCAGTGG 20299
Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322
||||| ||| ||||||||| |||||| ||| ||||||
Sbjct 20300 GGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAA 20336
>seq2870
Length=11522
Score = 86.0 bits (94), Expect = 2e-14
Identities = 129/179 (72%), Gaps = 6/179 (3%)
Strand=Plus/Plus
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329
|| || ||||||||| | ||| ||| ||||||| |||||||||| |||||| | |||
Sbjct 11268 CGTGAAGCAGCAGTGAGAAATCTTGG-CAATGGGTGAAAGCCTGATCCAGCAATGTTGCG 11326
Query 330 TGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGG 385
|||| || ||||| | | | | |||||||| | || || || | || |||||
Sbjct 11327 TGAGTGAAGAAGGGCAATGCCACTTGTAAAGCTTTTTCGTCGAGTGTGCGATCATGACAA 11386
Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444
||| ||| | ||||| | |||| | | ||||||||||||| |||| || | |||||
Sbjct 11387 GACTCGAGAAT-AAGCCTTGACTAAGTTCTTGCCAGCAGCCGCAGTAAGACTTGGGGGG 11444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497299356800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |