Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq18100 697 0.0
seq15999 697 0.0
seq5010 140 1e-30
seq4983 84.2 7e-14
>seq18100
Length=3423
Score = 697 bits (772), Expect = 0.0
Identities = 479/533 (90%), Gaps = 7/533 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCC-CTTAGGACACCTGCGTTAT 65
||| || || ||| ||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 2276 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGTCTCATCTTAGGACACCTGCGTTAT 2335
Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2336 CTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGAT 2395
Query 126 CGGCCCGCGAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182
|| || ||||| || |||| ||| ||| || || | || | ||||| ||||
Sbjct 2396 CGCCCGCCGAAGCGAGCCTTTGTTCCAAAAAGAGG--GGCATTGCCCCGCTTCCGATTCA 2453
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
|| ||||||||| |||| ||| ||||||||||||||||| ||| || ||||||||
Sbjct 2454 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTTGCCCGAA-GGCTCCCA 2512
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 2572
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2573 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 2632
Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2633 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 2692
Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2693 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 2752
Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2753 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 2805
Score = 159 bits (176), Expect = 1e-36
Identities = 146/178 (82%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 51 GGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT 110
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3235 GGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT 3294
Query 111 GTCATCAACCCGGATCGGCCCG-CGAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAG 167
||| || ||||||||| |||| ||||| || |||| ||| |||| || || |
Sbjct 3295 GTCTTCCGCCCGGATCGACCCGCCGAAGCGAGCCTTTGTTCCAAAAAAAGG--GGCATTG 3352
Query 168 ACCAG-TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTT 224
|| | ||||| |||| || ||||||||| |||| ||| |||||||||||||||||
Sbjct 3353 CCCCGCTTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTT 3410
>seq15999
Length=20577
Score = 697 bits (772), Expect = 0.0
Identities = 479/533 (90%), Gaps = 7/533 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| || || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 832 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 773
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 772 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 713
Query 127 GGCCCGC-GAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182
| ||||| |||| || |||| ||| ||| || || | || | ||||| ||||
Sbjct 712 GACCCGCCGAAGCGAGCCTTTGTTCCAAAAAGAGG--GGCATTGCCCCGCTTCCGATTCA 655
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
|| ||||||||| |||| ||| ||||||||||||||||| ||| || ||||||||
Sbjct 654 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTTGCCCGAA-GGCTCCCA 596
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 536
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 535 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 476
Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 416
Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 356
Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 355 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 303
>seq5010
Length=1398
Score = 140 bits (154), Expect = 1e-30
Identities = 93/100 (93%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCG--CGCTTGGTT-GAATTTCTT-CACTTTGA 495
||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct 4 AGAGTCATAGTTACTCCCGCCGTTTACCCCGTCGCTTGGTTTGAATTTCTTTCACTTTGA 63
Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||||| | ||||
Sbjct 64 CATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 103
>seq4983
Length=9912
Score = 84.2 bits (92), Expect = 7e-14
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8951 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 8996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634871733600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |