Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq18100 697 0.0 seq15999 697 0.0 seq5010 140 1e-30 seq4983 84.2 7e-14 >seq18100 Length=3423 Score = 697 bits (772), Expect = 0.0 Identities = 479/533 (90%), Gaps = 7/533 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCC-CTTAGGACACCTGCGTTAT 65 ||| || || ||| ||||||||||||||| |||||| | ||||||||||||||||||| Sbjct 2276 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGTCTCATCTTAGGACACCTGCGTTAT 2335 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 2336 CTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGAT 2395 Query 126 CGGCCCGCGAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 || || ||||| || |||| ||| ||| || || | || | ||||| |||| Sbjct 2396 CGCCCGCCGAAGCGAGCCTTTGTTCCAAAAAGAGG--GGCATTGCCCCGCTTCCGATTCA 2453 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| ||| || |||||||| Sbjct 2454 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTTGCCCGAA-GGCTCCCA 2512 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2513 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 2572 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 2573 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 2632 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2633 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 2692 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2693 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 2752 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 2753 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 2805 Score = 159 bits (176), Expect = 1e-36 Identities = 146/178 (82%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 51 GGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT 110 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3235 GGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT 3294 Query 111 GTCATCAACCCGGATCGGCCCG-CGAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAG 167 ||| || ||||||||| |||| ||||| || |||| ||| |||| || || | Sbjct 3295 GTCTTCCGCCCGGATCGACCCGCCGAAGCGAGCCTTTGTTCCAAAAAAAGG--GGCATTG 3352 Query 168 ACCAG-TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTT 224 || | ||||| |||| || ||||||||| |||| ||| ||||||||||||||||| Sbjct 3353 CCCCGCTTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTT 3410 >seq15999 Length=20577 Score = 697 bits (772), Expect = 0.0 Identities = 479/533 (90%), Gaps = 7/533 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 832 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 773 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 772 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 713 Query 127 GGCCCGC-GAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 | ||||| |||| || |||| ||| ||| || || | || | ||||| |||| Sbjct 712 GACCCGCCGAAGCGAGCCTTTGTTCCAAAAAGAGG--GGCATTGCCCCGCTTCCGATTCA 655 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| ||| || |||||||| Sbjct 654 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTTGCCCGAA-GGCTCCCA 596 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 536 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 535 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 476 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 416 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 356 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 355 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 303 >seq5010 Length=1398 Score = 140 bits (154), Expect = 1e-30 Identities = 93/100 (93%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCG--CGCTTGGTT-GAATTTCTT-CACTTTGA 495 ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| Sbjct 4 AGAGTCATAGTTACTCCCGCCGTTTACCCCGTCGCTTGGTTTGAATTTCTTTCACTTTGA 63 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||| | |||| Sbjct 64 CATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 103 >seq4983 Length=9912 Score = 84.2 bits (92), Expect = 7e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8951 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 8996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634871733600