Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq17268 185 3e-44 seq7305 185 3e-44 seq2025 111 5e-22 seq12871 77.0 1e-11 >seq17268 Length=15521 Score = 185 bits (204), Expect = 3e-44 Identities = 390/569 (69%), Gaps = 21/569 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 12774 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 12833 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 12834 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 12892 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| | || | || || |||||||||| || Sbjct 12893 AGAAACTGTCTACCTGAGACTGTCCCTTAGCCCGTACGTCCTGACACAAGGTTAGAATTC 12952 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCC-ACAACCACT-AGCGTGGCCGCATC 235 | | |||||||||| ||| | | ||| || || | | | |||| || Sbjct 12953 TAGCTCTTCTAGAGTGGTATCTCACTGATGGCTCGGACCCCCCCGGAAGGAGGCCT--TC 13010 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | || ||||||| || | || || || | || |||||| ||| | | ||||| Sbjct 13011 TTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGA 13068 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | || | | ||||||| || | | || Sbjct 13069 AGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT 13128 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411 ||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||| Sbjct 13129 TTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 13187 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 |||||||||||||||||||| |||||||||||| ||||||||||| |||||||| || Sbjct 13188 ACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACC 13247 Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTC 531 ||||||| | | ||| ||| || | | | |||| | ||| |||||| Sbjct 13248 GGGGCTT-TAGTCGCCGGCTC-----CCCTTTCATCAGGTCACCAACTTCCTTGACCTTC 13301 Query 532 CAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | |||| ||||||||||||| || |||| Sbjct 13302 CGGCACTGGGCAGGCGTCAGCCCCCATAC 13330 >seq7305 Length=44007 Score = 185 bits (204), Expect = 3e-44 Identities = 391/570 (69%), Gaps = 20/570 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 22302 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 22243 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 22242 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAC 22184 Query 121 TT-AAACTACCC-ACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATA 175 | |||||| | ||| | |||||||| || | || || |||||||||| Sbjct 22183 TAGAAACTAGTCTACCTGAGACTGTCCCTTGGCCCGTACGTCCTGACACAAGGTTAGAAT 22124 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCAT- 234 || | | ||||||||||| ||| | | | | | || | | || || | Sbjct 22123 TCTAGCTCTTCCAGAGTGGTATCTCACTGATGGCGTCGGACCCCCCCGGAAGGAGGCCTT 22064 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 22063 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTG 22006 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 22005 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 21946 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 21945 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 21887 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 21886 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 21827 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 21826 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 21773 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 21772 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 21743 >seq2025 Length=1832 Score = 111 bits (122), Expect = 5e-22 Identities = 119/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 282 AAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340 |||||||||| ||||| | ||||||||| |||| |||| | | ||||||| || Sbjct 1814 AAGCTATAGTAAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCAC 1755 Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCG 400 | | ||||||||||| | | || |||||||| ||| ||||||||| ||||||| Sbjct 1754 GGAGAATTCAATTTCACCGAGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCG 1695 Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 436 |||| |||| ||||| |||||||||||||||||| Sbjct 1694 TGCATGTCGCTACTTATGCGACAAGGAATTTCGCTA 1659 >seq12871 Length=45515 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 437 |||||||||| ||||||| |||||||||||||||||||||||| |||| ||| Sbjct 6271 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAATTCGTTAC 6220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702058243200