Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq17268 185 3e-44
seq7305 185 3e-44
seq2025 111 5e-22
seq12871 77.0 1e-11
>seq17268
Length=15521
Score = 185 bits (204), Expect = 3e-44
Identities = 390/569 (69%), Gaps = 21/569 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 12774 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 12833
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 12834 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 12892
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| | || | || || |||||||||| ||
Sbjct 12893 AGAAACTGTCTACCTGAGACTGTCCCTTAGCCCGTACGTCCTGACACAAGGTTAGAATTC 12952
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCC-ACAACCACT-AGCGTGGCCGCATC 235
| | |||||||||| ||| | | ||| || || | | | |||| ||
Sbjct 12953 TAGCTCTTCTAGAGTGGTATCTCACTGATGGCTCGGACCCCCCCGGAAGGAGGCCT--TC 13010
Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293
| | || ||||||| || | || || || | || |||||| ||| | | |||||
Sbjct 13011 TTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGA 13068
Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352
|| | | |||||||| |||| | || | | ||||||| || | | ||
Sbjct 13069 AGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT 13128
Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411
||||||| |||| | ||||||| | || |||||||||| ||||||| |||||||
Sbjct 13129 TTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 13187
Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471
|||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||
Sbjct 13188 ACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACC 13247
Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTC 531
||||||| | | ||| ||| || | | | |||| | ||| ||||||
Sbjct 13248 GGGGCTT-TAGTCGCCGGCTC-----CCCTTTCATCAGGTCACCAACTTCCTTGACCTTC 13301
Query 532 CAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| |||| ||||||||||||| || ||||
Sbjct 13302 CGGCACTGGGCAGGCGTCAGCCCCCATAC 13330
>seq7305
Length=44007
Score = 185 bits (204), Expect = 3e-44
Identities = 391/570 (69%), Gaps = 20/570 (4%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 22302 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 22243
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 22242 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAC 22184
Query 121 TT-AAACTACCC-ACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATA 175
| |||||| | ||| | |||||||| || | || || ||||||||||
Sbjct 22183 TAGAAACTAGTCTACCTGAGACTGTCCCTTGGCCCGTACGTCCTGACACAAGGTTAGAAT 22124
Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCAT- 234
|| | | ||||||||||| ||| | | | | | || | | || || |
Sbjct 22123 TCTAGCTCTTCCAGAGTGGTATCTCACTGATGGCGTCGGACCCCCCCGGAAGGAGGCCTT 22064
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | | || ||||||| || | || || || | || |||||| ||| | | ||||
Sbjct 22063 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTG 22006
Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||| | | |||||||| |||| | || | | ||||||| || | | |
Sbjct 22005 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 21946
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||
Sbjct 21945 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 21887
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 21886 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 21827
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 21826 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 21773
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 21772 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 21743
>seq2025
Length=1832
Score = 111 bits (122), Expect = 5e-22
Identities = 119/156 (76%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 282 AAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340
|||||||||| ||||| | ||||||||| |||| |||| | | ||||||| ||
Sbjct 1814 AAGCTATAGTAAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCAC 1755
Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCG 400
| | ||||||||||| | | || |||||||| ||| ||||||||| |||||||
Sbjct 1754 GGAGAATTCAATTTCACCGAGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCG 1695
Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 436
|||| |||| ||||| ||||||||||||||||||
Sbjct 1694 TGCATGTCGCTACTTATGCGACAAGGAATTTCGCTA 1659
>seq12871
Length=45515
Score = 77.0 bits (84), Expect = 1e-11
Identities = 48/52 (92%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 437
|||||||||| ||||||| |||||||||||||||||||||||| |||| |||
Sbjct 6271 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAATTCGTTAC 6220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702058243200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |