Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq19444 123 5e-26
seq13392 123 5e-26
seq12299 105 1e-20
seq7170 86.0 1e-14
seq15957 75.2 2e-11
>seq19444
Length=5613
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 1914 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 1962
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| | | |||| | ||||| ||| |||||
Sbjct 1963 GC------TTCTTCTCCGGGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 2015
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 2016 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 2075
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 2076 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2135
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || ||||| | || |||| |||||
Sbjct 2136 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 2174
>seq13392
Length=67015
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 55846 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 55894
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| | | |||| | ||||| ||| |||||
Sbjct 55895 GC------TTCTTCTCCGGGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 55947
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 55948 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 56007
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 56008 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 56067
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || ||||| | || |||| |||||
Sbjct 56068 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 56106
>seq12299
Length=4959
Score = 105 bits (116), Expect = 1e-20
Identities = 144/200 (72%), Gaps = 1/200 (1%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 3086 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 3145
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| |||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 3146 CTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 3205
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCC-GTTACCCCGCCTACTACCTAATGGAA 283
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| |
Sbjct 3206 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTTACCTGACCAACTACCTAATACTA 3265
Query 284 CGCATCCCCATCGTACACCG 303
|||| | |||| ||| ||
Sbjct 3266 CGCAGGCTCATCAAACAGCG 3285
>seq7170
Length=20343
Score = 86.0 bits (94), Expect = 1e-14
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186
||||| || | || ||| |||||| |||| ||||| |||||||||| |||| ||||||
Sbjct 20334 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCAGGAGTCC 20275
Query 187 GGACCGTGTCTCAGTTCCAATGTGG 211
|| |||||||||||| ||| |||||
Sbjct 20274 GGGCCGTGTCTCAGTCCCAGTGTGG 20250
>seq15957
Length=15107
Score = 75.2 bits (82), Expect = 2e-11
Identities = 83/111 (75%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 169 TGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|| ||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||| ||
Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499
Query 229 ACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| ||| ||| | | || ||| || ||||| | || |||| |||||
Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 1448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068585438400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |