Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq19444 123 5e-26 seq13392 123 5e-26 seq12299 105 1e-20 seq7170 86.0 1e-14 seq15957 75.2 2e-11 >seq19444 Length=5613 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 1914 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 1962 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| | | |||| | ||||| ||| ||||| Sbjct 1963 GC------TTCTTCTCCGGGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 2015 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 2016 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 2075 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 2076 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2135 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || ||||| | || |||| ||||| Sbjct 2136 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 2174 >seq13392 Length=67015 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 55846 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 55894 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| | | |||| | ||||| ||| ||||| Sbjct 55895 GC------TTCTTCTCCGGGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 55947 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 55948 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 56007 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 56008 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 56067 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || ||||| | || |||| ||||| Sbjct 56068 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 56106 >seq12299 Length=4959 Score = 105 bits (116), Expect = 1e-20 Identities = 144/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 3086 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 3145 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| |||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 3146 CTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 3205 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCC-GTTACCCCGCCTACTACCTAATGGAA 283 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| | Sbjct 3206 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTTACCTGACCAACTACCTAATACTA 3265 Query 284 CGCATCCCCATCGTACACCG 303 |||| | |||| ||| || Sbjct 3266 CGCAGGCTCATCAAACAGCG 3285 >seq7170 Length=20343 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| || | || ||| |||||| |||| ||||| |||||||||| |||| |||||| Sbjct 20334 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCAGGAGTCC 20275 Query 187 GGACCGTGTCTCAGTTCCAATGTGG 211 || |||||||||||| ||| ||||| Sbjct 20274 GGGCCGTGTCTCAGTCCCAGTGTGG 20250 >seq15957 Length=15107 Score = 75.2 bits (82), Expect = 2e-11 Identities = 83/111 (75%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 169 TGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || ||||||||||||| ||| |||||||||||| ||| ||||| || | ||||||| || Sbjct 1558 TGACTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 1499 Query 229 ACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||| ||| | | || ||| || ||||| | || |||| ||||| Sbjct 1498 CCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 1448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068585438400