Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3314 87.8 1e-12 >seq3314 Length=31422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 182/266 (68%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || ||||| || || ||||| | || || |||||||| Sbjct 23249 ATTTGGGAAATGTACAAAAAAGCCGAAGCCTCATTTTGGACAGCAGAAGAAGTCGATTTA 23190 Query 61147 TCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 || ||||| | | | ||| |||| | || ||| |||| || ||| | | || Sbjct 23189 TCGCAAGACCAACGTCATTACGAGTCGTTAACAGA-CGGCGAACGTCACTTCGTGACTCA 23131 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTAT-TGGAACGTT 61264 || | || || || ||||| || || || || || || ||||| | || ||| Sbjct 23130 CGTTCTCGCATTTTTCGCCGCATCAGATGGAATTGTTTTGGAAAATTTGGCTTCAAGGTT 23071 Query 61265 TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGG 61324 | | | ||| | || | | ||||| ||| ||| ||||| || ||||||||||| | Sbjct 23070 TAT-GAAAGAGATACAGATCGCCGAGGCACGTGCTTTTTACGGGTTTCAGATTGCCATTG 23012 Query 61325 AGAATGTCCACTCGGAGATGTACAGT 61350 ||||| |||| ||||| ||||| ||| Sbjct 23011 AGAATATCCATTCGGAAATGTATAGT 22986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397470729398000