Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20capsularis_20[genbank_20GCA_5F001974805.1_202017-01-30] 16,522 sequences; 317,178,409 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4645 271 2e-70 seq2273 271 2e-70 seq2134 271 2e-70 seq2654 266 8e-69 seq2530 262 1e-67 seq1883 244 3e-62 seq4624 131 4e-28 seq4630 104 6e-20 seq11212 82.4 2e-13 seq9716 77.0 8e-12 seq16205 73.4 1e-10 >seq4645 Length=1066 Score = 271 bits (300), Expect = 2e-70 Identities = 315/429 (73%), Gaps = 27/429 (6%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 859 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 800 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 799 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 740 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 739 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 680 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||||||| |||||||||||| ||| |||| | Sbjct 679 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 620 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 619 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 560 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 559 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 523 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 522 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 463 Query 418 CCCAACCAC 426 || | |||| Sbjct 462 CCTACCCAC 454 >seq2273 Length=1457 Score = 271 bits (300), Expect = 2e-70 Identities = 315/429 (73%), Gaps = 27/429 (6%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 516 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 457 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 456 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 397 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 396 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 337 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||||||| |||||||||||| ||| |||| | Sbjct 336 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 277 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 276 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 217 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 216 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 180 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 179 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 120 Query 418 CCCAACCAC 426 || | |||| Sbjct 119 CCTACCCAC 111 >seq2134 Length=1398 Score = 271 bits (300), Expect = 2e-70 Identities = 315/429 (73%), Gaps = 27/429 (6%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 796 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 737 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 736 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 677 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 676 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 617 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||||||| |||||||||||| ||| |||| | Sbjct 616 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 557 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 556 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 497 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 496 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 460 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 459 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 400 Query 418 CCCAACCAC 426 || | |||| Sbjct 399 CCTACCCAC 391 >seq2654 Length=1044 Score = 266 bits (294), Expect = 8e-69 Identities = 314/429 (73%), Gaps = 27/429 (6%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 36 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 95 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 96 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 155 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 156 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 215 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||||||| |||||||||||| ||| |||| | Sbjct 216 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 275 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 276 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 335 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 336 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 372 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| |||| |||| || ||| ||||||||||| Sbjct 373 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTCGTCTCGCGCCCCTAGGTATTCTCTA 432 Query 418 CCCAACCAC 426 || | |||| Sbjct 433 CCTACCCAC 441 >seq2530 Length=1173 Score = 262 bits (290), Expect = 1e-67 Identities = 314/429 (73%), Gaps = 28/429 (7%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 400 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 459 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 460 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACA-GGAATTTCGCTACCT 518 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 519 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 578 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||||||| |||||||||||| ||| |||| | Sbjct 579 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 638 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 639 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 698 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 699 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 735 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 736 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 795 Query 418 CCCAACCAC 426 || | |||| Sbjct 796 CCTACCCAC 804 >seq1883 Length=1266 Score = 244 bits (270), Expect = 3e-62 Identities = 302/412 (73%), Gaps = 22/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 1116 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1057 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1056 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 997 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||| ||||||| || | ||||| || | || Sbjct 996 CAGTTAGAGTTACTGCCGCCGTTTACC-GGGCTTCCATTCAAAGCTT----ATAAC--AC 944 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| |||||||||||| |||| || |||||| || || | | Sbjct 943 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 884 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 883 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 824 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 823 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 779 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 778 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 727 >seq4624 Length=1254 Score = 131 bits (144), Expect = 4e-28 Identities = 199/284 (70%), Gaps = 21/284 (7%) Strand=Plus/Minus Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 ||||| ||||||||||||||||||||| || | ||||| || | || | | Sbjct 1253 GTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTA----TAAC--ACTTCTCCTT 1200 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || || |||| |||||||||||| |||| || |||||| || || | || |||||| Sbjct 1199 TTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAG 1140 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 | ||||||||||||||||||||||| | |||||||| | | | | | | | | Sbjct 1139 TCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA-- 1082 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 || || |||| ||||||||||||||||||| | | ||||||| Sbjct 1081 -AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCATTTTGCCG 1035 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 1034 AGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 991 >seq4630 Length=1302 Score = 104 bits (114), Expect = 6e-20 Identities = 156/222 (70%), Gaps = 16/222 (7%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 || |||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 1301 ACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 1242 Query 258 TGTG-TTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGA 316 |||| |||||||||||||||||| | |||||||| | | | | | | | | | Sbjct 1241 TGTGCTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA---A 1185 Query 317 GCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAG 376 | || ||||| |||||||||||||||||| | | ||||||| || Sbjct 1184 GATAGGAGAGCACCC------------CTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 1137 Query 377 TTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| | ||||||||||||||| | |||| |||||| Sbjct 1136 TTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 1095 >seq11212 Length=113581 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||| ||| Sbjct 36200 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 36259 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||| ||||||||||||| | |||| Sbjct 36260 CGCGCCCCTAGGTATTCTCTACCTACCCAC 36289 >seq9716 Length=57961 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || || |||| ||||||| |||| |||| || |||||| || || | || |||||| Sbjct 14273 TTGACTTTCCAGCACCGGACAGGTGTCAAACTCTATACATCGTGTTACCACTTAGCAGAG 14332 Query 255 TGCTGTGTTTTTAATAAACAGTCGC 279 | ||||||||||||||||||||||| Sbjct 14333 TTCTGTGTTTTTAATAAACAGTCGC 14357 >seq16205 Length=39162 Score = 73.4 bits (80), Expect = 1e-10 Identities = 70/90 (78%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||| ||||| ||||||| || ||||||| |||||||| ||||| ||| Sbjct 26020 GGCACCCCTTCCCCCGAGGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 26079 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || || | |||||||||||| |||||| Sbjct 26080 CGCGCCCCGTTGTATTCTCTACCTAACCAC 26109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260591690624