Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20capsularis_20[genbank_20GCA_5F001974805.1_202017-01-30] 16,522 sequences; 317,178,409 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq6615 183 6e-44 seq4333 183 6e-44 seq1735 183 6e-44 seq4672 179 7e-43 seq2407 178 3e-42 seq2134 178 3e-42 seq2530 174 3e-41 seq2226 165 2e-38 seq2339 161 2e-37 seq2477 147 4e-33 seq2015 145 1e-32 seq3079 129 1e-27 seq2273 107 4e-21 >seq6615 Length=9956 Score = 183 bits (202), Expect = 6e-44 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| |||||||||| |||||||||| Sbjct 128 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGTGTAACGGAGGA 187 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| ||| || | || ||| | | | | | ||||||| |||||||| ||| Sbjct 188 GTTCGAAGGTACGCTTGGTACGGTCGGACATCGTACCTAAAGTGCAATGGCAAAAGCGTG 247 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 || ||||||| ||| |||||| |||||| |||||| || | || |||||||| ||| Sbjct 248 CTTAACTGCGAGACCGACAAGTCGAGCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGT 307 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 308 TCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 356 >seq4333 Length=1226 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 1219 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 1160 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 1159 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 1101 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 1100 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 1041 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 1040 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 991 >seq1735 Length=1168 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 245 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 304 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 305 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 363 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 364 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 423 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 424 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 473 >seq4672 Length=1125 Score = 179 bits (198), Expect = 7e-43 Identities = 170/216 (79%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184 |||| |||||||||||||||||||||||| |||||||||||||||||| ||| | | | Sbjct 987 CGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCAATGGTGGGC 928 Query 185 TCAGCTTGGATGGAAACCATGCGC-ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 |||| || |||||||| | | | ||||||| |||| ||| | ||||||||| | Sbjct 927 TCAGGACGGTTGGAAACCGTCTGTTAGAGTGCAATGGCATAAGCCCGCCTGACTGCGAGA 868 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 | |||||| ||||| |||||||||||| | || |||||||| ||| | ||||| | Sbjct 867 CTGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCTCGTGGAAGG 808 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| ||||||||||| ||| | ||||||| Sbjct 807 GCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 772 >seq2407 Length=1143 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| | ||||| |||||||||| ||||||||||| Sbjct 945 GGGACAGTCTCAGGTAGACAGTTTCTATAGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 886 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 885 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 827 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 826 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 767 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 766 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 717 >seq2134 Length=1398 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 975 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 1034 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 1035 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 1093 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 1094 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 1153 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 1154 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 1203 >seq2530 Length=1173 Score = 174 bits (192), Expect = 3e-41 Identities = 174/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 222 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 163 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 162 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 104 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 103 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 44 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332 ||| || ||||| ||||||||||| ||||||||||| ||| || Sbjct 43 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCT 1 >seq2226 Length=1246 Score = 165 bits (182), Expect = 2e-38 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| |||||||||||| ||||| | |||| | ||| ||| | || Sbjct 1242 GCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCC 1184 Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||| Sbjct 1183 CTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAA 1124 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 |||||| |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| Sbjct 1123 AGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGT 1064 Query 327 TACCCTGGGGATA 339 ||| || |||||| Sbjct 1063 TACTCTAGGGATA 1051 >seq2339 Length=1175 Score = 161 bits (178), Expect = 2e-37 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| |||||||||||| ||||| | |||| | ||| ||| | || Sbjct 1173 GCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCC 1115 Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||| Sbjct 1114 CTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAA 1055 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 |||||| |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| Sbjct 1054 AGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGT 995 Query 327 TACCCTGGGGATA 339 ||| || ||||| Sbjct 994 TACTCTAAGGATA 982 >seq2477 Length=1163 Score = 147 bits (162), Expect = 4e-33 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 17 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 76 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| Sbjct 77 GGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACT 136 Query 331 CTGGGGATA 339 || |||||| Sbjct 137 CTAGGGATA 145 >seq2015 Length=1125 Score = 145 bits (160), Expect = 1e-32 Identities = 150/195 (77%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 146 TCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATG 205 || |||||||||| |||||||||| | | ||| ||| || || || ||| | | | Sbjct 1125 TCTCCTCCCAAAGTGTAACGGAGGAGTTCGAAGGTACGCTTAGTACGGTCGGACATCGTA 1066 Query 206 CGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265 | | ||||||| |||||||| ||| || ||||||| ||| |||||| |||||| ||| Sbjct 1065 CCTAAAGTGCAATGGCAAAAGCGTGCTTAACTGCGAGACCGACAAGTCGAGCAGGTGCGA 1006 Query 266 AAGTCGGGCTTAATGATCCGGC-GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 ||| || | || |||||||| ||| ||| |||||| |||| |||||| |||||||||| Sbjct 1005 AAGCAGGACATAGTGATCCGGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAA 946 Query 325 GCTACCCTGGGGATA 339 | ||| ||||||||| Sbjct 945 GGTACTCTGGGGATA 931 >seq3079 Length=1435 Score = 129 bits (142), Expect = 1e-27 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||| |||||||| ||| || ||||||| ||| |||||| |||||| |||||| Sbjct 47 AGTGCAATGGCAAAAGCGTGCTTAACTGCGAGACCGACAAGTCGAGCAGGTGCGAAAGCA 106 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || | || |||||||| ||| ||| |||||| |||| |||||| ||||||||||| ||| Sbjct 107 GGACATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACT 166 Query 331 CTGGGGATA 339 ||||||||| Sbjct 167 CTGGGGATA 175 >seq2273 Length=1457 Score = 107 bits (118), Expect = 4e-21 Identities = 171/232 (74%), Gaps = 14/232 (6%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCC-TCCCAAAGAGTAACGGAGG 169 ||||||| |||| | |||||| ||||||| ||| |||||||| |||||||||| Sbjct 694 GGGACAGC-TCAGGTAGACAGTTTCTATGGGGCGTAGGCCGTCCCAAAG-GTAACGGAGG 751 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228 || ||| | | |||| | ||| ||| | || | | ||||||| || | ||| Sbjct 752 CGTGCAAGGTT--CCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAA--GCCAGAGGA 806 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAA-TGATCCGGC 287 | |||||| | ||| | ||| |||||||||||||||||| |||| ||||||| | Sbjct 807 GCT--GACTGCAAGACCACCC-GTCGAGCAGGGACGAAAGTCGGCCTTACGTGATCCGAC 863 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| |||||| |||| ||| || |||||| Sbjct 864 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGAT-AAAGTTACTCTAGGGATA 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982237687872