Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20capsularis_20[genbank_20GCA_5F001974805.1_202017-01-30] 16,522 sequences; 317,178,409 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq4645 113 5e-23 seq2654 113 5e-23 seq2273 113 5e-23 seq2134 113 5e-23 seq1883 107 2e-21 seq2530 104 3e-20 >seq4645 Length=1066 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 877 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 818 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 817 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 759 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 758 ACAAGGAATTTCGCTACCTTAGGACCGTTA 729 >seq2654 Length=1044 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 18 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 77 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 78 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 136 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 137 ACAAGGAATTTCGCTACCTTAGGACCGTTA 166 >seq2273 Length=1457 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 534 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 475 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 474 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 416 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 415 ACAAGGAATTTCGCTACCTTAGGACCGTTA 386 >seq2134 Length=1398 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 814 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 755 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 754 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 696 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 695 ACAAGGAATTTCGCTACCTTAGGACCGTTA 666 >seq1883 Length=1266 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 1141 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 1082 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 1081 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 1022 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 1021 GACAAGGAATTTCGCTACCTTAGGACAGTTA 991 >seq2530 Length=1173 Score = 104 bits (114), Expect = 3e-20 Identities = 113/150 (75%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| ||||||| || |||||||||| || | | ||||||| ||| Sbjct 382 GGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 441 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 442 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 500 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||| |||||||||||||||||||||||||| Sbjct 501 ACA-GGAATTTCGCTACCTTAGGACCGTTA 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547112416878