Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq8750 161 7e-38 seq1892 161 7e-38 seq8925 147 2e-33 seq10616 93.3 3e-17 seq10904 84.2 2e-14 >seq8750 Length=1336 Score = 161 bits (178), Expect = 7e-38 Identities = 110/124 (89%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| ||||||||||||||||||||||||| ||||||| || || Sbjct 325 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACTCCGTGGTAACCGTCC 266 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 265 TCCCGAGGGTTAGACTAGCTACTTCTGGAGCAACCCACTCCCATGGTGTGACGGGCGGTG 206 Query 135 TGTA 138 |||| Sbjct 205 TGTA 202 >seq1892 Length=1173 Score = 161 bits (178), Expect = 7e-38 Identities = 110/124 (89%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| ||||||||||||||||||||||||| ||||||| || || Sbjct 834 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACTCCGTGGTAACCGTCC 893 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 894 TCCCGAGGGTTAGACTAGCTACTTCTGGAGCAACCCACTCCCATGGTGTGACGGGCGGTG 953 Query 135 TGTA 138 |||| Sbjct 954 TGTA 957 >seq8925 Length=1159 Score = 147 bits (162), Expect = 2e-33 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||||| | |||||||||||||||| Sbjct 572 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAATCCTACCGTGGTAAGCGCCCTCC 513 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 ||||||||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 512 TTGCGGTTAAGCTACCTACTTCTGGTAAAACCCGCTCCCATGGTGTGACGGGCGGTGTGT 453 Query 138 A 138 | Sbjct 452 A 452 >seq10616 Length=2492 Score = 93.3 bits (102), Expect = 3e-17 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| ||| || ||||| || || Sbjct 509 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGATCCCACCGTGGTCTGCTGCC 568 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||| ||||| || |||| || |||| |||||||||||||||||||||||| Sbjct 569 TCCTTGCGGTTAGCGCACAGCCTTCGGGTGAAACCAACTCCCATGGTGTGACGGGCGGTG 628 Query 135 TGTA 138 |||| Sbjct 629 TGTA 632 >seq10904 Length=2414 Score = 84.2 bits (92), Expect = 2e-14 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| | | | ||||| || || Sbjct 1239 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCTTACCGTGGTTGGCTGCC 1180 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||| ||||| ||| |||| | |||| |||||||||||||||||||||||| Sbjct 1179 TCCTTGCGGTTAGCGCACCACCTTCGGGTAAAACCAACTCCCATGGTGTGACGGGCGGTG 1120 Query 135 TGTA 138 |||| Sbjct 1119 TGTA 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345519265680