Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq8941 152 5e-35 seq10905 107 2e-21 seq8937 105 6e-21 seq2211 105 6e-21 seq9587 96.9 3e-18 seq8938 96.9 3e-18 seq8917 96.9 3e-18 seq12111 95.1 1e-17 seq8825 95.1 1e-17 seq8652 95.1 1e-17 seq9309 87.8 2e-15 seq9286 87.8 2e-15 seq9234 87.8 2e-15 seq9299 82.4 7e-14 seq21857 78.8 9e-13 >seq8941 Length=1312 Score = 152 bits (168), Expect = 5e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 290 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 289 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 256 >seq10905 Length=1442 Score = 107 bits (118), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAA--CACGAAAGTGGAC 114 |||||| | ||||||||||| ||||||||||| |||||| || ||| ||| ||| Sbjct 989 ACCAGGGGGTAGCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGCCACACAAGGCGAC 1048 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| |||||||||||||||||||||||||||| Sbjct 1049 GTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1086 >seq8937 Length=1214 Score = 105 bits (116), Expect = 6e-21 Identities = 77/89 (87%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123 ||||||||||| |||||||||||||||||| || || ||| |||||||||||| Sbjct 1045 GCGACTGTTTAGCAAAAACACAGCACTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGT 1104 Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||||||| Sbjct 1105 GTGACGCCTGCCCGGTGCCGGAAGGTTAA 1133 >seq2211 Length=1031 Score = 105 bits (116), Expect = 6e-21 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 323 ACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 264 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 263 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 228 >seq9587 Length=1997 Score = 96.9 bits (106), Expect = 3e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| ||| | |||| ||||||||||| |||||||||| || ||| || |||| Sbjct 1865 GGTCGCAGAGAAATGGCCCAGGCGACTGTTTAACAAAAACACAGGGCTTTGCCAAAACGA 1806 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| |||||||| || |||| |||||||||||| |||||||||| Sbjct 1805 AAGTTGACGTATAAGGCCTGACACCTGCCCGGTGCTGGAAGGTTAA 1760 >seq8938 Length=1077 Score = 96.9 bits (106), Expect = 3e-18 Identities = 75/89 (84%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123 ||||||||||| |||||||||| ||||||| || || ||| |||||||||||| Sbjct 413 GCGACTGTTTAGCAAAAACACAGGACTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGT 472 Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||||||||||||||||||| Sbjct 473 CTGACGCCTGCCCGGTGCCGGAAGGTTAA 501 >seq8917 Length=1506 Score = 96.9 bits (106), Expect = 3e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| ||| | |||| ||||||||||| |||||||||| || ||| || |||| Sbjct 474 GGTCGCAGAGAAATGGCCCAGGCGACTGTTTAACAAAAACACAGGGCTTTGCCAAAACGA 415 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| |||||||| || |||| |||||||||||| |||||||||| Sbjct 414 AAGTTGACGTATAAGGCCTGACACCTGCCCGGTGCTGGAAGGTTAA 369 >seq12111 Length=4672 Score = 95.1 bits (104), Expect = 1e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||||| || ||| || |||||||| ||| Sbjct 1229 GCGACTGTTTATCAAAAACACAGGGCTCTGCAAAATCGCAAGATGAAGTATAGGGCCTGA 1170 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| |||||||||| Sbjct 1169 CACCTGCCCGGTGCTGGAAGGTTAA 1145 >seq8825 Length=1587 Score = 95.1 bits (104), Expect = 1e-17 Identities = 89/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 42 ATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAA-CACAGCACTCTGCAA 100 |||| || || || | ||||| |||||||||||| ||||| ||||| ||||||| | Sbjct 1467 ATGCTGGCCGCAGTGAAGAGGCCCAGGCGACTGTTTATCAAAAAGCACAGGACTCTGCTA 1526 Query 101 ACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||| | ||||||||| |||| |||||||||||| |||||||||| Sbjct 1527 AATCGAAAGATGCTGTATAGGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 1578 >seq8652 Length=1291 Score = 95.1 bits (104), Expect = 1e-17 Identities = 89/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 42 ATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAA-CACAGCACTCTGCAA 100 |||| || || || | ||||| |||||||||||| ||||| ||||| ||||||| | Sbjct 1052 ATGCTGGCCGCAGTGAAGAGGCCCAGGCGACTGTTTATCAAAAAACACAGGACTCTGCTA 1111 Query 101 ACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||| | ||||||||| |||| |||||||||||| |||||||||| Sbjct 1112 AATCGAAAGATGCTGTATAGGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 1163 >seq9309 Length=1008 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 241 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 182 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 181 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 136 >seq9286 Length=1111 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 648 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 589 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 588 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 543 >seq9234 Length=1338 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 912 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 853 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 852 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 807 >seq9299 Length=1163 Score = 82.4 bits (90), Expect = 7e-14 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| ||||||||| || |||||| |||||| || ||||| Sbjct 226 AGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCAAAATCGAAAGATGAGGTATA 285 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||| |||||||||||| |||||||||| Sbjct 286 AGGCCTGACACCTGCCCGGTGCTGGAAGGTTAA 318 >seq21857 Length=32185 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||| | |||||||||| ||| ||||| || Sbjct 10311 GGTCGCAGTGACCAGGCCCGAGCGACTGTTAACCAAAAACACAGGTCTCCGCAAAGTCGT 10370 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||| ||| |||||||||||| || Sbjct 10371 AAGACCATGTATGGGGGCTGACGCCTACCCAGTGCCGGAAGGTCAA 10416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476684903758