Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq18994 89.7 2e-16 seq23146 84.2 1e-14 seq11805 84.2 1e-14 seq11625 84.2 1e-14 seq11159 84.2 1e-14 seq11119 84.2 1e-14 seq11117 84.2 1e-14 seq11100 84.2 1e-14 seq11097 84.2 1e-14 seq11051 84.2 1e-14 seq11031 84.2 1e-14 seq11030 84.2 1e-14 seq9283 84.2 1e-14 seq8971 84.2 1e-14 seq5424 84.2 1e-14 seq5380 84.2 1e-14 seq2976 84.2 1e-14 seq2576 84.2 1e-14 seq14350 80.6 1e-13 seq11481 80.6 1e-13 seq3003 80.6 1e-13 seq11818 78.8 4e-13 seq2929 78.8 4e-13 seq9302 75.2 5e-12 seq2630 71.6 6e-11 >seq18994 Length=35292 Score = 89.7 bits (98), Expect = 2e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||| Sbjct 9576 GGAAAAGAAACTTACAAGGATTCCCTCAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 9634 >seq23146 Length=10487 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 535 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 593 >seq11805 Length=1322 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 391 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 449 >seq11625 Length=1221 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 24 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 82 >seq11159 Length=1489 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 1136 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 1078 >seq11119 Length=1654 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 1008 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 950 >seq11117 Length=1884 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 228 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 170 >seq11100 Length=2540 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 549 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 607 >seq11097 Length=2277 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 1161 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 1103 >seq11051 Length=1928 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 410 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 468 >seq11031 Length=1355 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 664 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 722 >seq11030 Length=2040 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 153 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 211 >seq9283 Length=1191 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 880 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 938 >seq8971 Length=1534 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 301 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 243 >seq5424 Length=1172 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 75 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 133 >seq5380 Length=1185 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 378 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 320 >seq2976 Length=1150 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 101 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 43 >seq2576 Length=1168 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| |||| |||||||||||||| Sbjct 166 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 108 >seq14350 Length=77254 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || ||||| |||| |||||||||||| |||| |||||||||||||| Sbjct 18576 GGAAAAGAAACTTACAAGGATCCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 18634 >seq11481 Length=8599 Score = 80.6 bits (88), Expect = 1e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| || Sbjct 3988 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAAGAGCTCA 4044 >seq3003 Length=1010 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| ||| |||||||||||||| Sbjct 690 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCCAACCGGGAAGAGCCCAGC 748 >seq11818 Length=1485 Score = 78.8 bits (86), Expect = 4e-13 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAG-TAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| || |||||||||| |||| |||||||||||||| Sbjct 665 GGAAAAGAAACTTACAAGGATTCCCTTAGGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 724 >seq2929 Length=1159 Score = 78.8 bits (86), Expect = 4e-13 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAA-CAGGGAAGAGCCCAGC 59 |||||||||||| || |||||||||| |||||||||||| ||| | |||||||||||||| Sbjct 950 GGAAAAGAAACTTACAAGGATTCCCTTAGTAACGGCGAGCGAACCCGGGAAGAGCCCAGC 1009 >seq9302 Length=1523 Score = 75.2 bits (82), Expect = 5e-12 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||| || |||||| ||||||||| || ||| |||||| | Sbjct 959 GGAAAAGAAACTAACAAGGATTCGCTTAGTAACTGCGAGTGAAGAGCGAAAAGCCCATC- 1017 Query 61 CCGAATCC 68 | |||||| Sbjct 1018 CTGAATCC 1025 >seq2630 Length=1940 Score = 71.6 bits (78), Expect = 6e-11 Identities = 50/57 (88%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 |||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||| Sbjct 880 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCA 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230346177120