Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01001787.1 Length=163 Score E Sequences producing significant alignments: (Bits) Value seq4355 187 2e-45 >seq4355 Length=1245 Score = 187 bits (206), Expect = 2e-45 Identities = 139/163 (85%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60 ||||||||| | |||| ||||||||| |||||||| |||| |||||||||||||||||| Sbjct 534 TCGATCTACCCGCTGGCCGGCCAGGAACTGACGCCGCTGTTCGGCCAGCCGGAATGGTTC 593 Query 61 CTCGGGATCCTGCCGAGCCAGCAGGGCAACTTGAAGGTATTGGACACCGCGCGTTGGGTC 120 ||||||||||||||||||||| |||||| |||||||| |||| || ||||| |||||| Sbjct 594 CTCGGGATCCTGCCGAGCCAGGCCGGCAACCTGAAGGTACTGGATACGGCGCGCTGGGTC 653 Query 121 ATGCCCGACCGCTATCGGGATGATTTCCGCCAGGGCTTGCAAT 163 |||||||| ||||| || || ||| | ||| | ||| |||||| Sbjct 654 ATGCCCGAGCGCTACCGCGACGATCTGCGCGACGGCCTGCAAT 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422298035544