Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq2357 136 4e-30 seq8978 131 2e-28 seq2405 131 2e-28 seq10881 125 7e-27 seq8938 125 7e-27 seq12111 118 1e-24 seq9299 118 1e-24 seq9587 82.4 7e-14 >seq2357 Length=1367 Score = 136 bits (150), Expect = 4e-30 Identities = 125/157 (80%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 629 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 570 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142 ||||| |||| ||||||||||| || ||||||||||||||||| | | ||| | | Sbjct 569 CTCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCTAACAGACGGTTT 510 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || ||||| | ||| ||||||| || ||||||||| Sbjct 509 CCAACCGTCCTGAGCCAACCTTCGCGCGCCTCCGTTA 473 >seq8978 Length=1265 Score = 131 bits (144), Expect = 2e-28 Identities = 124/157 (79%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 326 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 267 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142 ||||| |||| ||||||||||| || ||||||||||||||||| | | ||| | | Sbjct 266 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCTAACAGACGGTTT 207 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || ||||| | ||| ||| ||| || ||||||||| Sbjct 206 CCAACCGTCCTGAGCCCACCATCGCGCGCCTCCGTTA 170 >seq2405 Length=1078 Score = 131 bits (144), Expect = 2e-28 Identities = 125/158 (79%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 642 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 701 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCA--CTAACCTCACGATG 141 ||||| |||| ||||||||||| || ||||||||||||||| ||||| | || | Sbjct 702 CTCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCTAACAGC-CGGTT 760 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| |||| | ||| ||||||| || ||||||||| Sbjct 761 TCCAACCGGCCTGAGCCAACCTTCGCGCGCCTCCGTTA 798 >seq10881 Length=3220 Score = 125 bits (138), Expect = 7e-27 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85 ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| | Sbjct 2894 TGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGAT 2953 Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145 ||| || |||| ||||||||| ||||||||||| |||| | |||| | || Sbjct 2954 CGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACCA 3013 Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||| | || ||||| | ||||||||| Sbjct 3014 AGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTA 3047 >seq8938 Length=1077 Score = 125 bits (138), Expect = 7e-27 Identities = 125/159 (79%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 1066 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 1007 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCT-CA--CGAT 140 ||||| ||||| ||||||||||| || ||||||||||||||||| | | || || | Sbjct 1006 CTCGATTCGTCAATCTCGCAGTCAGGCAGGCTTATGCCATTGCACT--CTTGCAGCCGGT 949 Query 141 GTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| |||| | ||| ||| ||| || ||||||||| Sbjct 948 TTCCAACCGGCCTGAGCCTACCATCGCGCGCCTCCGTTA 910 >seq12111 Length=4672 Score = 118 bits (130), Expect = 1e-24 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | ||||||||||||||||||| || |||||| ||||| Sbjct 582 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATGCTCTACTTTCGTACCTGA 641 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| | || |||| ||||||||| |||||||||||||||| Sbjct 642 TCGACCTGTATGTCTCTCAGTCAAGCTCCCTTATGCCATTGCACT 686 >seq9299 Length=1163 Score = 118 bits (130), Expect = 1e-24 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct 883 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGA 824 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 ||| | || ||| ||||||||| ||||||||| |||||||| || ||| | || Sbjct 823 TCGGCCTGTATGCCTCACAGTCAAGCAAGCTTATGCTATTGCACTCCCCGTACGGTTACC 764 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | |||| ||||| | ||||||||| Sbjct 763 AAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTA 729 >seq9587 Length=1997 Score = 82.4 bits (90), Expect = 7e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||| ||||||||||| ||||| |||||||||||| || |||||| ||||| Sbjct 1200 TTGAGCGACGGCCCTTCCATATGGAACCGCCGGATCACTATCTCCCACTTTCGTGCCTGC 1259 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||| | || ||| ||||||||| ||| ||| |||||||| Sbjct 1260 TCGGCCTGTTTGCCTCACAGTCAAGCACCCTTTTGCGATTGCACT 1304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473485676216