Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq4963 109 9e-22 seq4430 77.0 5e-12 >seq4963 Length=1207 Score = 109 bits (120), Expect = 9e-22 Identities = 187/267 (70%), Gaps = 7/267 (3%) Strand=Plus/Plus Query 14 CGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCA 73 ||||||| || |||| || || || ||||||| | | |||||||||| || ||| | Sbjct 175 CGCTGGAGTTTGCGGCCTTTCCCACC-ATTCTGCTGTTTTCGACCCTGCTGCGCCTGTCG 233 Query 74 TTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGC- 132 ||||||| ||||| ||||| | | |||| | || || ||| |||||| || Sbjct 234 CTGAACGTAGCCTCTACGCGTATTATTTTGCTGGAAGGGCATACCGG---TGCCGCGGCG 290 Query 133 -CGGTAAGG-TGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGT 190 ||| | || || | | ||||| || | | || | ||||| |||| || |||| Sbjct 291 GCGGGACGGGTGGTGGAAGCCTTTGGCCACTTCCTGGTTGGCGGAAACTTCGCCATCGGG 350 Query 191 ATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGG 250 ||||||||||| |||||| |||||||||||||| |||| | ||||| || || || Sbjct 351 ATCGTGGTGTTTATCATCCTGGTGATCATCAACTTTATGGTTATCACCAAAGGTGCGGGC 410 Query 251 CGGATTTCCGAGGTGAGCGCGCGGTTT 277 || || |||| ||| | ||||| ||| Sbjct 411 CGTATCGCCGAAGTGGGTGCGCGCTTT 437 >seq4430 Length=1666 Score = 77.0 bits (84), Expect = 5e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 170 GGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTG 229 |||||||| | || | ||||||||||| ||| ||||| ||||||||||||| || Sbjct 24 GGCGGTAATTTCGCCATTGGTATCGTGGTATTCATCATCCTCGTGATCATCAACTTCATG 83 Query 230 GTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGGTT 276 || | ||||| || ||||| || || |||| ||| ||||||| || Sbjct 84 GTCATCACCAAAGGTGCCGGACGTATCGCCGAAGTGGGCGCGCGTTT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809404568126