Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq4892 286 7e-75 seq3254 87.8 4e-15 >seq4892 Length=1093 Score = 286 bits (316), Expect = 7e-75 Identities = 275/353 (78%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||| || ||| | || ||||| ||||||||||| |||| || |||||||| ||||| Sbjct 177 CGATCGGCTGAGACACGTGGCCGAGCGCGCCGAATTGGGCGAGCAGCGCGAAGCCATCAT 236 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||| ||||| ||| ||||| || || |||||||||||| ||||| Sbjct 237 CGCCGTGACCATCCCCGAACGGCCGGGCAGTTTTCGCGCCTTCTGCGAGGCCCTGGGCCG 296 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180 ||| ||||||||||||||||| ||||| | |||| | ||| ||||| || ||||| || Sbjct 297 GCGGCAGATCACCGAATTCAATTACCGCTACCACACTGGCGAAGAGGCCCATATCTTCGT 356 Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240 |||||| |||||||| ||| | ||| || ||| ||| || ||| ||||| ||| Sbjct 357 CGGCGTCCAGACCCATCCCCAGCGCGATCCGCGCGACGCCCTCATCCAAGGCCTGCGCGA 416 Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300 ||||| || |||||||||||||||||||| || || |||||||||||||| |||||||| Sbjct 417 CCAGGGCTTTCCGGTGCTGGACCTGACCGACAACGAACTGGCCAAGCTGCATATCCGCCA 476 Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 | || ||||||||||| |||| ||| || | || |||||||||||||| Sbjct 477 CACCGTGGGCGGCCATGCCGCGCGGGTCGGCCAGGAGCAGGTGTTCCGCTTCG 529 >seq3254 Length=1597 Score = 87.8 bits (96), Expect = 4e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 20 GCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCATCGCCGTGACCATTCCCGAG 79 || ||||| ||||| || ||||| ||||||||| | |||||||||| ||||| || Sbjct 260 GCCGAGCGGGCCGAACTCGGTGAGCACCGCGAAGCCGTGTTCGCCGTGACGATTCCTGAA 201 Query 80 AAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGT-GGGCAAGCGCCAGATCACCGAATT 138 | ||| || ||||||||||| ||| | | || ||| || ||| | || |||||||| Sbjct 200 ACGCCAGGTGCATTCAAGGCGTTTTGCC-GCCTGTTGGGTAACCGCAATATTACCGAATT 142 Query 139 CAACTACCGTTT 150 ||| |||||||| Sbjct 141 CAATTACCGTTT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026944042304