Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corchorus_20olitorius_20[genbank_20GCA_5F001974825.1_202017-01-30] 24,918 sequences; 334,911,943 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq3356 127 5e-27 >seq3356 Length=1859 Score = 127 bits (140), Expect = 5e-27 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 238 TCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAG 297 ||| | ||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 604 TCAACGCTCCAGCACCCACGTGTCCTTCGTTCCGCCGCCCTGCGATGAGTTGACCACCAG 545 Query 298 CGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCC 357 |||||| || || ||||||||| || | ||| |||||||||| ||| |||||||| Sbjct 544 CGAGCCGGCCCGCAACGCCACGCGCGTGAGGCCGCCGGGCACCATGCGCACGTCCTTGCC 485 Query 358 CGAGAGCACGAAGGGTCG 375 || |||||||| || || Sbjct 484 GGACAGCACGAACGGCCG 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119720918400