Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq17 307 2e-81 seq109 298 9e-79 seq128 280 3e-73 seq4788 205 2e-50 seq65 131 3e-28 >seq17 Length=6318978 Score = 307 bits (340), Expect = 2e-81 Identities = 244/292 (84%), Gaps = 1/292 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||| |||||||||| ||||||| Sbjct 5234768 TACTAGGTTGAATTACTATTGCGAC-ACCATCATCAGTAGGATAAAACTAACTTGTCTCA 5234710 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | || ||||||||||||||||||||||||| |||||||||||||| ||| ||| || Sbjct 5234709 CAATGGCCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCTAACACTTGGTGA 5234650 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||| |||||||||||||| ||||||| |||||||||||| ||||| Sbjct 5234649 ATTCTGCTTCACAATGATTGGAAGAGCCGACATTGAAGGATAAAAAAGCAACGTTGCTAT 5234590 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||| |||||||||||||||||||| |||||||||||||||| |||||||| | Sbjct 5234589 GAACGCTTACCTGCCACAAGCCAGTTATCCTTGTGGTAACTTTTCTGATGCCTCTAGCTT 5234530 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | |||||||| || | |||||||| ||| | | |||||| ||| ||||| Sbjct 5234529 CGAATTTCGAAGGTCAAAAGGATCAATACGTTATGCTTTCACAGTTCGTATT 5234478 Score = 304 bits (336), Expect = 2e-80 Identities = 238/283 (84%), Gaps = 1/283 (0%) Strand=Plus/Plus Query 12 ATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAA 71 ||||| |||| | || ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 5826366 ATTACTATTGCAAC-ACAGTCATTAGTAGGGTAAAACTAACGTATCTCATGACGGTCTAA 5826424 Query 72 ACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCG 131 ||||||||||||||||||| | || | ||||||||||| ||| ||||| |||||| Sbjct 5826425 ACCCAGCTCACGTTCCCTAATGGTCAGCGAACAATCCAAAACTTGGTGAATTTTGCTTCA 5826484 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 |||| |||||||| |||||||||||||| ||||||||| || |||||||||||||||| Sbjct 5826485 CAATGAGAGGAAGAGACGACATCGAAGGATAAAAAAGCAAGGTTGCTATGAACGCTTGGC 5826544 Query 192 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG 251 |||||||||||||||||||| ||||||||||||| || ||||||| ||||||||| | Sbjct 5826545 TGCCACAAGCCAGTTATCCCAATGGTAACTTTTCTAACATCTCTAGCTTCAAATTTCAAC 5826604 Query 252 GGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | |||| ||||||||| |||| |||||| ||| ||||||| Sbjct 5826605 AGTCTAAGGGATCGATATGCCATGATTTCATAGTTCGTATTCA 5826647 >seq109 Length=408487 Score = 298 bits (330), Expect = 9e-79 Identities = 217/249 (87%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||| || Sbjct 307051 GTCAACAGTAGGGTAAAACTAACCCGTCTCATGATGGTCTAAACCCAGCTCACATTCTCT 306992 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || | | ||||||||||||| ||| |||||||||||| ||||||||||||| || Sbjct 306991 TTTGG-GACTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTCG 306933 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 306932 ACATCGAAGGATAAAAAAGCAACATCGCTATGAAC--TTGGCTGCCACAAGCCAGTTATC 306875 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||||||||| |||||||| ||||| |||| | ||||| ||| || ||||||||||||||| Sbjct 306874 CCTGTGGTACCTTTTCTGACACCTTTAGCTTAAAATTACGAAGGTCTAAAGGATCGATAG 306815 Query 270 GCCACACTT 278 || || ||| Sbjct 306814 GCTACGCTT 306806 >seq128 Length=90697 Score = 280 bits (310), Expect = 3e-73 Identities = 184/202 (91%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 87286 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 87344 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 87345 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTAA 87404 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87405 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 87464 Query 181 GAACGCTTGGCTGCCACAAGCC 202 |||||||||||||||||||||| Sbjct 87465 GAACGCTTGGCTGCCACAAGCC 87486 >seq4788 Length=129 Score = 205 bits (226), Expect = 2e-50 Identities = 122/128 (95%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 60 Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||||||||||| |||||||||| ||||||| ||| || ||||||||||||||||||| Sbjct 61 TGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCA 120 Query 274 CACTTTCA 281 | |||||| Sbjct 121 CGCTTTCA 128 >seq65 Length=1937772 Score = 131 bits (144), Expect = 3e-28 Identities = 96/112 (86%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 ||| ||||||| ||||||||||||||||| |||||||||||| || |||||||||| | Sbjct 1199737 AACACTTGGCTACCACAAGCCAGTTATCCTTGTGGTAACTTTCTTGACACCTCTAGCTTT 1199796 Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| || || ||||||||||||||||||| |||||| |||| ||||| Sbjct 1199797 AAATTTTGAAGGTTTAAAGGATCGATAGGCCACGCTTTCACGGTTCTTATTC 1199848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854131171584