Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq31464 178 3e-42 seq29202 178 3e-42 seq17 136 8e-30 seq47 122 2e-25 seq147 109 1e-21 seq18 89.7 1e-15 seq81 86.0 1e-14 >seq31464 Length=156017 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 108435 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 108494 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 108495 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 108553 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 108554 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 108613 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 108614 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 108663 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 133917 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 133858 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 133857 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 133799 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 133798 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 133739 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 133738 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 133689 >seq29202 Length=1093 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 79 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 138 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 139 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 197 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 198 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 257 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 258 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 307 >seq17 Length=6318978 Score = 136 bits (150), Expect = 8e-30 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||| |||||||||| |||||||||| Sbjct 5686005 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGTATAGGCCTCCCAAAAGATAACGGAGGC 5685946 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 ||||| | |||||| || || | || || | |||| ||||||| |||| Sbjct 5685945 ATGCAAAGGTTTCCTCAGGCCAGACTGAGAT--TG-GCCCTTGAGTGGAAAGGCAGAAGG 5685889 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||| | | |||| | ||| |||||||||||||||| | |||| |||||| | Sbjct 5685888 GAGCTTGACTACAAGACCCACCCGTCAAGCAGGGACGAAAGTCAGCCTTAGTGATCCAAC 5685829 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 5685828 GATGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 5685777 >seq47 Length=2762240 Score = 122 bits (134), Expect = 2e-25 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| || ||||||| ||||| ||||| Sbjct 1752594 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCTTCCCAAAAGGTAACAGAGGC 1752535 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAA----CCATGCGCACAGTGCAAAGGCAAAAG 226 | ||||| | ||| | || | | | |||| || |||||||||| | ||| Sbjct 1752534 GTGCAAAGGTTTCCTTGGGCCAGACGAAGATTCACCAT-CG---AGTGCAAAGGTATAAG 1752479 Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286 || | |||||||| | |||| | || |||||||||||||||||| |||| |||| | Sbjct 1752478 GGAGCTTGACTGCAAGACCCACCCGTTGAGCAGGGACGAAAGTCGGCCTTAGTGATATGA 1752419 Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| || ||||| || |||||||| | | ||||||| ||| || |||||| Sbjct 1752418 CAGTGTCGAGTGGAAGGGTCGTCGCTCAATGAATAAAAGTTACTCTAGGGATA 1752366 >seq147 Length=56368 Score = 109 bits (120), Expect = 1e-21 Identities = 164/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAG-TAACGGAGGCG 171 |||||| |||| | || ||| ||||||| ||||||| || || ||| ||||||| Sbjct 33587 GACAGTCTCAGGTAGACAATTTCCATGGGGCGTAGGCCTCCCCAAAAGGTAATGGAGGCG 33528 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTG 230 ||||| | |||||| |||||| | || | | |||| ||||||| |||| | Sbjct 33527 TACAAAGGTTTCCTCAGGCCAGATGGAGATTG-GCCCTCGAGTGTAAAGGCAGAAGGAAG 33469 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 || ||| | | |||| | | | |||||| ||||||||| |||| ||||||| ||| Sbjct 33468 CTTAACTACAAGACCCAC----CCAACAGGGATGAAAGTCGGCCTTAGTGATCCGATGGT 33413 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || ||||| || | |||||| ||||||||||| || || || ||| Sbjct 33412 GCCGAGTGGAAGGGTCATCGCTCAACGGATAAAAGTGACTCTAGGAATA 33364 >seq18 Length=5997143 Score = 89.7 bits (98), Expect = 1e-15 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| ||||||||| | ||| | || || ||||||||||||| Sbjct 4464170 AGTGCAAAGGCAGAAGGGAGTTTGACTGTAAGACCAACCCGTAGAGTAGGGACGAAAGTC 4464111 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || ||||||||| || | | ||||| || |||||||| | ||||||||| ||| Sbjct 4464110 GGCCTTAATGATTCGATATTATCAAGTGGAAGGGTCGTCGCTCAATGGATAAAAGTTAC 4464052 >seq81 Length=1286048 Score = 86.0 bits (94), Expect = 1e-14 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || ||||| |||||| || |||| | ||||||||||||||| | ||||| || ||| Sbjct 57414 GGTAGTTTATCTGGGGAGGATGCCTTCTAAAGAGTAACGGAGGTGTGCAAAGGTAGGCTC 57473 Query 187 A-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 | ||| ||| | || || | || || | ||| ||| |||||| || ||| Sbjct 57474 AAGCTCAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCCTGTATGACTGTGAGACC 57528 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | ||| | ||| |||||||||||| | || ||||| || || | ||||| ||| Sbjct 57529 GACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCTGGGAGTTCCATGTGGAAAGGC 57588 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| |||||| |||| ||| ||||||| Sbjct 57589 TCTCGCTCAACGGATCAAAGGTACGTCGGGGATA 57622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982090897664