Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq64 123 3e-26 seq15639 118 1e-24 seq17 113 5e-23 seq8 107 2e-21 seq6 100 3e-19 seq65 89.7 5e-16 seq9243 86.0 6e-15 seq6627 86.0 6e-15 seq24 82.4 8e-14 >seq64 Length=2007380 Score = 123 bits (136), Expect = 3e-26 Identities = 140/183 (77%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| ||| |||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 13383 ACTGTTAATTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 13442 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAAT 127 ||| |||| | |||||| | || | ||||| ||| || ||| || | | ||||| Sbjct 13443 TGGGATAACATCATAGGATAT-CGATCCTATTCTGTTGGCCTTCGGGGTCGGA--GTAAT 13499 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||| ||||||||| | ||||| || || | |||||||||||||||||| Sbjct 13500 GATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATT 13559 Query 188 TAT 190 ||| Sbjct 13560 TAT 13562 >seq15639 Length=306 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | || ||||| ||| Sbjct 249 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATGCATTAGCAT 190 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | | ||||| ||| || | ||| || ||||||| Sbjct 189 GGGATAACATCATAGGATTTT-GATCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 132 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 131 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 72 Query 190 T 190 | Sbjct 71 T 71 >seq17 Length=6318978 Score = 113 bits (124), Expect = 5e-23 Identities = 138/182 (76%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| | || |||| | |||||||| ||| Sbjct 5190530 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGTCTACGCTCTGTATACATTAGCAT 5190589 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATG 128 || |||| | |||||| | || | ||||| ||| || ||| || | || | |||| Sbjct 5190590 GGGATAACATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGAG-ATCGAA-GCAATG 5190646 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | || | ||| ||||||||| | |||||| || |||| |||| |||||||||||||| Sbjct 5190647 GTTAACAAGGACAGTCGGGGGCATTCGTATTCCATAGTCAGAGGTAAAATTCTTGGATTT 5190706 Query 189 AT 190 || Sbjct 5190707 AT 5190708 Score = 95.1 bits (104), Expect = 1e-17 Identities = 132/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || ||||||| || ||||||||| | | |||||| || | |||| | |||||||| ||| Sbjct 5835070 CTGTTACTTTAAAGAAATTAGAGTGCTAAAAGCAAGCGTGCGCTCTATATACATTAGCAT 5835011 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | | ||||| | | || | | ||| | ||||||| Sbjct 5835010 GGGATAACATCATAGGATTTT-GATCCTATTCTATTGGCCTTTGGGATTGGA-GTAATGA 5834953 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||||||||||||| | ||||| || | || ||||||||||||| ||||| Sbjct 5834952 TTAACAAGGATAGTCGGGGGCATTCGTATTTCATAGCCAGAGGTGAAATTCTTTAATTTA 5834893 Query 190 T 190 | Sbjct 5834892 T 5834892 Score = 86.0 bits (94), Expect = 6e-15 Identities = 131/182 (72%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| |||||||| | |||||||| |||| |||| | ||| |||| ||| Sbjct 5603037 CTATTACTTTGAAGAAATTAGAATGCTCAAAGCAAGCCTATGCTTTGTATATATTAGCAT 5603096 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG-TTTCTAGGACCGCCCGTAATG 128 || || | | |||||| | || | |||| ||| || |||| || | ||||| Sbjct 5603097 GGGATCACATCATAGGATTT-CGATCCTATCCTGTTGGCTTTCGAGATAAGAT--TAATG 5603153 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | || | | ||||| | ||||| ||| || | | ||||||||||||||||| Sbjct 5603154 ATTAACAGAGACAATTGGGGGCATTCGTATTTAATAGTTAGACGTGAAATTCTTGGATTT 5603213 Query 189 AT 190 || Sbjct 5603214 AT 5603215 >seq8 Length=7373812 Score = 107 bits (118), Expect = 2e-21 Identities = 133/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 7373243 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGAATGTG 7373184 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | || | ||||| ||| || | ||| || |||||||| | Sbjct 7373183 ATAAGATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGATGA 7373126 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| |||||||| | ||||| || ||| ||||||||||||||||||||| Sbjct 7373125 ACAGGGACAGTCGGGGACATTCGTATTTCATAATCAGAGGTGAAATTCTTGGATTTAT 7373068 >seq6 Length=8244739 Score = 100 bits (110), Expect = 3e-19 Identities = 130/176 (74%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 16 ACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAAT 74 |||||||| ||||||| | | |||||||| || | |||| | || ||||| ||||| || Sbjct 7466100 ACTTTGAAGAAATTAGTGTGCTCAAAGCAAGCATACGCTCTGTATTCATTAGCATGGGAT 7466159 Query 75 AATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAAT 134 || | |||||| | || | |||| ||| ||| | |||| || |||||||| || Sbjct 7466160 AACATCATAGGATTT-CGATCATATTCTGTTGGTCTTCAGGATCGAA-GTAATGATTAAC 7466217 Query 135 ACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | |||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 7466218 GGGAACTGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 7466273 >seq65 Length=1937772 Score = 89.7 bits (98), Expect = 5e-16 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||||||||||||| | |||||||| | || |||| | |||||||| ||||| Sbjct 1224597 TTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGTCTAAGCTCTGTATACATTAGCATGGG 1224538 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | | | ||||| | | || || || | || ||||| | | Sbjct 1224537 ATAACATCATAGGA-TTTTGATCCTATTCTATTGGCTTTCAGAATCG-AAGTAATAACTA 1224480 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 | | ||| |||||| | | ||||| || |||| || |||||||||| |||| Sbjct 1224479 ACAAGGACAGTCGGCGACATTCGTATTTCATAGTCAGAGATGAAATTCTTAGATT 1224425 >seq9243 Length=186 Score = 86.0 bits (94), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 46 GCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGT 104 |||| |||| | |||||||| ||||| |||| | |||||| | || | ||||| ||| Sbjct 184 GCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTCTGT 126 Query 105 AGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATT 164 || | ||| || |||||||| || | ||| ||||||||| | ||||| || Sbjct 125 TGGCCTTCGGGATCGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATA 67 Query 165 GTCAAAGGTGAAATTCTTGGATTTAT 190 |||| ||||||||||||||||||||| Sbjct 66 GTCAGAGGTGAAATTCTTGGATTTAT 41 >seq6627 Length=149 Score = 86.0 bits (94), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 46 GCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGT 104 |||| |||| | |||||||| ||||| |||| | |||||| | || | ||||| ||| Sbjct 3 GCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTCTGT 61 Query 105 AGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATT 164 || | ||| || |||||||| || | ||| ||||||||| | ||||| || Sbjct 62 TGGCCTTCGGGATCGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATA 120 Query 165 GTCAAAGGTGAAATTCTTGGATTTAT 190 |||| ||||||||||||||||||||| Sbjct 121 GTCAGAGGTGAAATTCTTGGATTTAT 146 >seq24 Length=5660502 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAA 73 |||||||||| ||||| || | | |||||| |||| ||| ||||| ||| ||| | | Sbjct 112169 TTACTTTGAAGAAATTGAAGTGCTTAAAGCAAGCCTACACTCTAATACGTTAGCATTGGA 112110 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGG-TTTCTAGGACCGCCCGTAATGATAA 132 ||| | |||| | | | |||| ||| || |||| || | ||||| || | Sbjct 112109 TAACATCATAGAATTT-CAACCATATTCTGTTGGCTTTCGAGATCAAA--GTAATCATTA 112053 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| |||||||| ||||| | ||||| || || | |||||||||||||| |||||| Sbjct 112052 ATAGGGATAGTCAGGGGTATTTGTATTTCATAGTGAGAGGTGAAATTCTTGAATTTAT 111995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511843938560