Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq31464 132 9e-29 seq199 132 9e-29 seq25334 89.7 9e-16 seq80 89.7 9e-16 seq21371 87.8 3e-15 seq8 77.0 6e-12 >seq31464 Length=156017 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 106217 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 106276 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| ||||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 106277 GAGTT-GCAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 106329 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 106330 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 106386 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 106387 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 106446 Query 249 CCT 251 ||| Sbjct 106447 CCT 106449 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 136135 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 136076 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| ||||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 136075 GAGTT-GCAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 136023 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 136022 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 135966 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 135965 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 135906 Query 249 CCT 251 ||| Sbjct 135905 CCT 135903 >seq199 Length=13696 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 458 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 517 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| ||||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 518 GAGTT-GCAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 570 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 571 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 627 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 628 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 687 Query 249 CCT 251 ||| Sbjct 688 CCT 690 >seq25334 Length=663 Score = 89.7 bits (98), Expect = 9e-16 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| |||||||||||| |||| |||||| | Sbjct 274 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAATATCTTAGTAGCCAGA 215 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| |||| | |||| ||||||||| ||||| Sbjct 214 GGAAAAGAAAGCAAAAGTGATTCCCGTAGTAACGACGAGTGAAATGGGAGCAGCCT 159 >seq80 Length=1357521 Score = 89.7 bits (98), Expect = 9e-16 Identities = 164/236 (69%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | | || ||| ||| | ||||||| || | ||| || Sbjct 712641 GGTGGATACCTAGGCACTCAGAGACGAGGAAAGGCGTAGTAAGAAATGAAATGCTTTAGG 712700 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| ||||| | | | ||||| ||| || ||||| || |||| ||| Sbjct 712701 GAGTT-GCAAATAAGCGTAGATCCAAAGAATTGCGAATAGGTTAACC------TTTCAAA 712753 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| || |||||||||||||| ||| Sbjct 712754 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGAAAACCTGGTGAACTGAAACATCTTAGT 712810 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||| ||||||||||| ||| | ||||||| ||| | |||||||||| ||| Sbjct 712811 AGCTAGAGGAAAAGAAAGCAAAAGTGATTCCCGTTATAGCGACGAGCGAAATAGGA 712866 >seq21371 Length=468 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||||| | |||| | ||| || | ||| || ||| ||||||||||||||||| |||| Sbjct 245 ATTGC-TACTGAGTCCATGGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGTA 187 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||||||||||| | |||||| ||||| | ||| |||||||||| ||| Sbjct 186 GCCTGAGGAAAAGAAATCAAAAGGGATTCCTGTAGTAGCGTCGAACGAAATGGGAGCAGC 127 Query 250 CT 251 || Sbjct 126 CT 125 >seq8 Length=7373812 Score = 77.0 bits (84), Expect = 6e-12 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| || || | || | || ||| |||||||||||||||| |||||| | Sbjct 664359 TGCTGAATCTATGGGCAGGCGAGAGACAACCTAGCGAACTGAAACATCTTAGTAGCCAGA 664418 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||||| ||| | |||| | ||||| ||||||| |||||||| Sbjct 664419 GGAAAAGAAAGCAAAAGCGATTTGCGTAGTAGCGGCGAGCAAAATGGGA 664467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918111034624