Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20melo_20[refseq_20GCF_5F000313045.1_202012-10-05] 31,464 sequences; 374,928,489 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq23 201 9e-47 >seq23 Length=5684809 Score = 201 bits (222), Expect = 9e-47 Identities = 559/844 (66%), Gaps = 20/844 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||| ||||||||||| | || ||||||||| | || ||||| Sbjct 1472903 ATGTACAAGAAAGCCCTAGCCTCCTTCTGGACCGCCGAAGAGGTCGATCTCTCACAAGAC 1472962 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||| ||| | || || |||| ||||| | | || | || Sbjct 1472963 CTCCGCCATTGGGATTCCTTAACTTCCGACGAGAAACACTTCATCACTTACGTCCTTGCC 1473022 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || || |||||||| ||||| | | ||| ||| | | || Sbjct 1473023 TTCTTCGCCGCCTCTGATGGTATCGTTTTGGAGAACCTTGCCGGACGGTTCATGAAAGAA 1473082 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| | || || | ||||| || || || ||| || ||||| | || Sbjct 1473083 GTCCAAGTCGCTGAAGCCAGAGCCTTCTATGGATTTCAAATTTGTATTGAGAACATTCAT 1473142 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG--CGGGCGGAACGTGAA- 61392 || |||||||| ||| ||||| | || || || |||| ||| | | ||| ||| Sbjct 1473143 TCTGAGATGTATAGTCTTCTCCTTGAAACTTATATCAAGGATTCCAGTGAGAA---GAAT 1473199 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 || |||| |||| || || || | || |||||| ||| || |||||||| || Sbjct 1473200 CGGCTGTTTCATGCTATTGATACTGTCCCATGTGTGAAGAAGAAGGCCGATTGGGCGTTG 1473259 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 || ||||| || || | || |||||| ||| || | |||||||||| ||| Sbjct 1473260 AAGTGGATTGATAGCACG--GACT-CATTTGCTGAGCGGATTTTGGCATTTGCTTGCGTC 1473316 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGC-CGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 ||||| | || ||| || | |||| | | || || |||||||| |||||||| | Sbjct 1473317 GAGGGAATTTTCTTCTCAGG-TAGTTTCTGCTCTATTTTCTGGTTGAAAAAACGTGGGTT 1473375 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || |||| ||| || || ||||| ||||| || || || | |||||||| Sbjct 1473376 AATGCCTGGATTGACGTTCTCAAACGAATTGATTTCACGAGATGAAGGTCTTCATTGTGA 1473435 Query 61632 TTTTGC-TGTTT-TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 |||||| ||||| | |||||| | || ||| | ||||| || ||| Sbjct 1473436 TTTTGCTTGTTTGTTGTATTCA-----TTGTTGAGGAAGAAATTGAGTGAGGATCGAGTG 1473490 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | |||||||| ||||| || ||| || |||||| | ||| |||||||| Sbjct 1473491 AGGCAGATTGTTACGGAGGCCGTGGATATAGAGAGGGAATTCGTTTGTGATGCTTTGCCG 1473550 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA- 61808 || | || | || |||||| | | | ||| || || ||||||||||| || || Sbjct 1473551 GTGGCTCTTGTTGGAATGAATGGAGATTTGATGAGTCAATACATTGAATTTGTGGCGGAT 1473610 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 || ||||| ||| ||||| | || ||||||||| ||||||||||||||| Sbjct 1473611 AGGTTGGTTGGAACATTGGGGTACG-AGAAAATCTATAATGTTCAAAACCCATTTGATTG 1473669 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| |||||||| || | || ||||| ||||| || |||||| | || || || || Sbjct 1473670 GATGGAGTTGATTTCGTTGCAAGGGAAGACTAATTTCTTTGAGAAAAGAGTTGGGGAATA 1473729 Query 61929 TCAA 61932 ||| Sbjct 1473730 CCAA 1473733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397415545592960