Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq17 401 9e-110 seq2 401 9e-110 seq4 356 3e-96 seq3 352 4e-95 seq5 228 1e-57 seq1 219 6e-55 >seq17 Length=15755 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 11136 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 11193 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11194 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11253 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 11254 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11313 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 11314 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 11373 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 11374 GCCATAGTCCCTCTAA 11389 >seq2 Length=23174626 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 12482610 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 12482553 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12482552 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 12482493 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 12482492 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 12482433 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 12482432 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 12482373 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 12482372 GCCATAGTCCCTCTAA 12482357 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 4/68 (6%) Strand=Plus/Minus Query 170 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG 229 ||||| ||||| ||||||||||||| ||||||| |||||||||| |||||||||||| Sbjct 13035949 CGCGCTTGCGGTCCAGAACATCTAA-GGCATCATAGACCTGTTA---CCTCAAACTTCCT 13035894 Query 230 TGGCCTAA 237 || |||| Sbjct 13035893 TGATCTAA 13035886 >seq4 Length=23425844 Score = 356 bits (394), Expect = 3e-96 Identities = 235/256 (92%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||| |||||||| |||||||||| |||||||||||||||||||||||| | Sbjct 10169310 GTACAAAAGGCACGGACGTAGGGAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 10169367 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 10169368 CTCGTTGAAGACCAACAATTGCAATGACCTATCCCCATCACGATGAAATTTCAAAGATTA 10169427 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | ||| || |||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 10169428 CTCGGGCCAGTCGACCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 10169487 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||| || Sbjct 10169488 CCCAGAACATCTAAGGACATCAAAGACCTGTTATTGGCTCAAACTTCCTTGGCCTAAGAG 10169547 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 10169548 GCCATAGTCCCTCTAA 10169563 >seq3 Length=39782674 Score = 352 bits (390), Expect = 4e-95 Identities = 234/256 (91%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||| | |||||||||||| |||||||||| ||||||||| |||||||||||||| | Sbjct 21393188 GTAAAAATGCCAGGGACGTAGTGAACGCGAGCT-GATGACTCGTGCTTACTAGGAATT-C 21393245 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21393246 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 21393305 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || || |||||||||||||| |||||||||||||||||||||||||||| ||| |||| Sbjct 21393306 CCTGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCACGCATGCGA 21393365 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||| || |||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 21393366 CCCAAAAAATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 21393425 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 21393426 GCCATAGTCCCTCTAA 21393441 Score = 127 bits (140), Expect = 3e-27 Identities = 78/82 (95%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 48 TACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA 107 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 36960807 TACTAGGAATT-CCTCGTTGAAGATCAACAATTGCAATGATCTATCCCCATCACGATGAA 36960865 Query 108 ATTTCAAAGATTACCCGGACCT 129 ||||||||||||||| || ||| Sbjct 36960866 ATTTCAAAGATTACCTGGGCCT 36960887 >seq5 Length=28023477 Score = 228 bits (252), Expect = 1e-57 Identities = 195/238 (82%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||| |||| ||||||| || | ||||| ||| ||||| ||||||| |||||| | Sbjct 1673656 GTATAAAAAGCAGAAACGTAGTTAAAGAGAGCT-GATAACTCGTGCTTACTGGGAATT-C 1673599 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || ||||||||||||| |||| |||| |||| ||||||||||||||||||| Sbjct 1673598 CTCATTAAAGACCAACAATTACAATAGCTTATCTTCATCGGGATGAAATTTCAAAGATTA 1673539 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | || || |||| |||||| ||| ||||||| ||||||| |||| | | || |||||| Sbjct 1673538 CTCGAACTTGTCAACCAAGGCTATATACTCGTTAAATACATTAGTGCAACACGTGTGCGG 1673479 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||| ||||||||||||||||| |||| ||||| |||||||||||||| ||||||||| Sbjct 1673478 CCCATAACATCTAAGGGCATCATAGACTTGTTAGTGCCTCAAACTTCCTTGGCCTAAA 1673421 Score = 116 bits (128), Expect = 6e-24 Identities = 100/120 (83%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||| ||| ||||||||| | |||| |||||||| |||||||| || || | Sbjct 2138249 GTACAAAAGGCCTGGATGTAGTCAACTCAAGCT-GATGACTCATGCTTACTAAGAGTT-C 2138306 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || |||||| |||||||||||||| || ||||||||| | ||||||||||| ||||||| Sbjct 2138307 CTAGTTGAACACCAACAATTGCAAGAATTTATCCCCATTATGATGAAATTTC-AAGATTA 2138365 >seq1 Length=29149675 Score = 219 bits (242), Expect = 6e-55 Identities = 193/237 (81%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| |||| || |||||||| ||||| |||| ||||| || || ||| ||||||| | Sbjct 23286108 GTACAGAGGGGAGAGACGTAGTAAACGCAAGCT-GATGATTCACGTTTATTAGGAATG-C 23286051 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||| |||||||||||||||||||||||||||| |||||| ||||| || || Sbjct 23286050 TTCGTTGAAGATCAACAATTGCAATGATCTATCCCCATCAGAATGAAACTTCAAGGACTA 23285991 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | | || ||| ||||| |||| ||||||||||||||| || ||| || ||||| | Sbjct 23285990 CATGT--CTATCGACCAAGACTATAGGCTCGTTGAATACATCGGTATAGTGCACGTGCAG 23285933 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 ||||||||||||||| ||||||| || | ||||| ||||||||||| || ||||| Sbjct 23285932 TCCAGAACATCTAAGGACATCACATACTTTTTATTACCTCAAACTTCTTTGACCTAA 23285876 Score = 181 bits (200), Expect = 2e-43 Identities = 143/168 (85%), Gaps = 10/168 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||||||||||||||| | |||| |||| ||||||||||||| ||||| | Sbjct 68393 GTAGAAAGGGCAGGGACGTAGTCAACACAAGCT-GATGGCTCGCGCTTACTAAGAATT-C 68336 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 68335 CTCGTTGAA-ACCAACAATTGCAATGATATATCTCCATCACGATGAAATTTCAAAGATTA 68277 Query 121 CCCGGACCTGTCGGC-------CAAGGTGATAGACTCGTTGAATACAT 161 | ||| ||| || || ||||| || ||| |||||||||||| Sbjct 68276 CTCGGGCCTATCAGCTATAGTACAAGGATATTGACCCGTTGAATACAT 68229 Score = 165 bits (182), Expect = 1e-38 Identities = 120/138 (87%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||| ||||||||||| |||||||||||||||||||||| | Sbjct 68081 GTACAAAGGGCAAGGATGTAGTCAACGC-------ATGACTCGCGCTTACTAGGAATA-C 68132 Query 61 CTCGTTGAAGACCAACAATTGCAATGAT---CTATCCCCATCACGATGAAATTTCAAAGA 117 || ||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 68133 CTTGTTGAAGACCAACAATTGCAATGATGACCTGTCCCCATCACGATGAAATTTCAAAGA 68192 Query 118 TTACCCGGACCTGTCGGC 135 |||| |||||| |||||| Sbjct 68193 TTACTCGGACCCGTCGGC 68210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998615850