Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17 235 1e-59 seq3 235 1e-59 seq4 199 7e-49 seq2 150 3e-34 seq5 111 3e-22 >seq17 Length=15755 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 12097 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGTCGGGTCGTGC 12038 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 12037 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 11978 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| |||||| | || | |||||||||||| | ||| || Sbjct 11977 ATTAGCATGGGATAACGTCATAGGATTT-CGATCCTATTTTGTTGGCCTTCGGGATCGGA 11919 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 11918 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 11859 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 11858 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 11800 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 11799 GAACGAAAGTTGGGGG 11784 >seq3 Length=39782674 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 21394149 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 21394090 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 21394089 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 21394030 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| |||||| | || | |||||||||||| | ||| || Sbjct 21394029 ATTAGCATGGGATAACGTCATAGGATTT-CGATCCTATTTTGTTGGCCTTCGGGATCGGA 21393971 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 21393970 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 21393911 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 21393910 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 21393852 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 21393851 GAACGAAAGTTGGGGG 21393836 >seq4 Length=23425844 Score = 199 bits (220), Expect = 7e-49 Identities = 194/246 (79%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || ||||||| || ||| ||||||| |||||||| |||| |||| | |||||||||||| Sbjct 10170203 CTGTTACTTTAAAGAAACTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 10170144 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 10170143 GGTATAACGTCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 10170085 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| ||||||||| | ||||| | || ||||||||||||||||||||||| Sbjct 10170084 TAACATGGACAGTCGGGGGCATTCGTATTTCACAGTTAGAGGTGAAATTCTTGGATTTAT 10170025 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || ||| |||||||||||||||||| |||||||| Sbjct 10170024 GAAAGACGAACAACTGCGAAAGCATTTGCCATGGATGTTTTCATTAATCA-AGAACGAAA 10169966 Query 311 GTTAGG 316 ||| || Sbjct 10169965 GTTGGG 10169960 >seq2 Length=23174626 Score = 150 bits (166), Expect = 3e-34 Identities = 143/179 (80%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 || |||||||||| ||||||||||| |||||||| |||| ||| | ||||||||||||| Sbjct 12485455 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCT-GTATACATTAGCATG 12485513 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 | |||| | |||||| || | | ||||| |||||| | ||| | ||||||||| Sbjct 12485514 GGATAAC-GCATAGGATGT-CAATCCTATTCTGTTGGCCTTCGGGATCAGAGTAATGATT 12485571 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 || ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 12485572 AACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 12485630 >seq5 Length=28023477 Score = 111 bits (122), Expect = 3e-22 Identities = 164/227 (72%), Gaps = 9/227 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATG 131 ||||||| || |||||| |||| ||||||| | ||| ||| | ||||||||| || Sbjct 2139099 TTACTTTTAAGAAATTAAAGTGCCCAAAGCAAG--TTTACTCTTTGTATACATTAG--TG 2139044 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 | |||| | || | | | | | ||||| |||||| | | ||||| | ||||||| Sbjct 2139043 GGATAAAATCATTGAATTTT-GATACTATTCTGTTGGCCTTT-GGACCAGAGCAATGATT 2138986 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||||||| |||| | |||| | | || ||||||| ||||||| |||||| Sbjct 2138985 AATAGGGATAGTTAGGGGCATTCATATTTTGTAGCCAAAGGTGAAGTTCTTGGGTTTATT 2138926 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||| ||| | || || || ||| | ||| |||||||||||||| Sbjct 2138925 AAAGATGAACAATTGGTAATGCATTCCCTAAGTATGTTTTCATTAAT 2138879 Score = 105 bits (116), Expect = 1e-20 Identities = 135/185 (73%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 116 CGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG 175 || ||||||||||||||||||| | ||| || | | | ||| | || | || | Sbjct 1672818 CGTATACATTAGCATGGAATAACATCATAAGATTTATA-TCCAATTCTATTAGCTTTTGA 1672876 Query 176 GACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 || || ||||||||||| | |||| || ||| | || || || |||| |||||| Sbjct 1672877 GATCGGAGTAATGATTAACATAAATAGCCGAGGGCATTCGTGTTTCATAGTCAAAGGTGA 1672936 Query 236 AATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 ||||||| ||||||| || || ||| |||| |||||| || |||| |||||||||||| Sbjct 1672937 AATTCTTAGATTTATGAAAAACGAACAACTGTGAAAGCATTTGCCAATGATGTTTTCATT 1672996 Query 296 AATCA 300 |||| Sbjct 1672997 GATCA 1673001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198261120