Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6 228 3e-57 seq4 208 3e-51 seq17 196 2e-47 seq1 95.1 5e-17 seq2 91.5 6e-16 >seq6 Length=29076228 Score = 228 bits (252), Expect = 3e-57 Identities = 224/283 (79%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 13602461 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 13602520 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| || Sbjct 13602521 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 13602577 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 13602578 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 13602637 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| Sbjct 13602638 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGTAGCGA 13602697 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 13602698 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 13602740 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| || || || Sbjct 13602074 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGC 13602133 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 13602134 TAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 13602193 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 13602194 TGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 13602238 >seq4 Length=23425844 Score = 208 bits (230), Expect = 3e-51 Identities = 218/282 (77%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||||||| | ||||||| || | || Sbjct 10167860 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTTAACGGCTAGTAA 10167801 Query 465 ACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGA 521 |||| | | || || ||| ||| || ||||| ||| | | |||| |||||| ||| Sbjct 10167800 ACCCATAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCGA 10167744 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || | || |||||| |||| |||||||||||||| Sbjct 10167743 CCGACCTTGATCTTCTGAGAAGGGTTCGGGTGTGAGCATGTCTGTCGGGACCCGAAAGAT 10167684 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 ||||| |||||||||| |||| ||||||||||||||||| | ||||||| || ||| | Sbjct 10167683 GGTGACCTATGCCTGAGCAGGGCGAAGCCAGAGGAAACTCCGATGGAGGCCCGTAGCAAT 10167624 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| | ||||| | |||||||||||||||| Sbjct 10167623 ACTGACGTGCAAATTGTTCGTCTGACTTGGGTATAGGGGCGA 10167582 Score = 174 bits (192), Expect = 7e-41 Identities = 210/280 (75%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAAC 466 ||||||||| ||||||||| ||||||||| |||| | ||||||| ||| | |||| Sbjct 10161505 CCCGTCTTGAAACACGGACTAAGGAGTCTTACATGTGTGCGAGTTAACGGGCGAGTAAAC 10161446 Query 467 CCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGACC 523 || | | ||||| ||| ||| || | ||| || | | |||| |||||| | | | Sbjct 10161445 CCATAAGGCGTAAGGAAGCTGACTGG---TCGGATCCTCTAGTGGGTTGCACCACCAATC 10161389 Query 524 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || | |||| | | || |||| || | |||||| ||| |||||||||||||| Sbjct 10161388 GACCATGATCTTGTGAGAAGGATCCGATTGTGAGCATGTTTGTCAAGACCCGAAAGATGG 10161329 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| ||| ||||| ||||||||||||||||||||| || || | | | Sbjct 10161328 TGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCCGTAGTGATAC 10161269 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||| | ||| | |||||||||||||||| Sbjct 10161268 TGACGTGCAAATCGTTTGTCTGACTTGGGTATAGGGGCGA 10161229 Score = 143 bits (158), Expect = 1e-31 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || | ||| |||| || |||||||||||||||||| | || ||| |||||||| Sbjct 10168256 TGAGGCGCTTTCAACGAATCAGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTC 10168197 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 || || ||||||||| ||| ||||||||||||| ||||||| | || |||||||| Sbjct 10168196 TGTCCAAGGCTAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATG 10168137 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTG 188 ||||| |||||| ||||||||| ||| || | | ||||||||| Sbjct 10168136 AAAAGGACTTTGAAAAGAGAGTCAAATAGTGCTTAAAATTGTTG 10168093 Score = 107 bits (118), Expect = 8e-21 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 ||||||||||||||||||||| | ||| |||||||||||||||||||||| ||| | Sbjct 14534515 GAAAGATGGTGAACTATGCCTCAGCGGGGCGAAGCCAGAGGAAACTCTGGTGTTGGCCCA 14534456 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | || ||||||||| | ||||| | ||||||||||||| || Sbjct 14534455 TAGCGATATTGACGTGCAAATTGTTCGTCTGACTTGGGTATAGGGGTGA 14534407 >seq17 Length=15755 Score = 196 bits (216), Expect = 2e-47 Identities = 201/257 (78%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 9696 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 9637 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| || Sbjct 9636 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 9580 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 9579 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 9520 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| || ||||||||||||||||||||||||||| || |||| Sbjct 9519 TGGTGAACTATGCCTGAGCGGGACGAAGCCAGAGGAAACTCTGGTGGAGGCCCGTAGCGA 9460 Query 641 TTCTGGCGTGCAAATCG 657 | ||| ||||||||||| Sbjct 9459 TACTGACGTGCAAATCG 9443 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| || || || Sbjct 10083 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGC 10024 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 10023 TAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 9964 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 9963 TGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 9919 >seq1 Length=29149675 Score = 95.1 bits (104), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 9/198 (5%) Strand=Plus/Minus Query 495 TGGGA-ACCCGTGAGGGT-GCACCATCGACCGAT----CCTGATGTCTTCGGATGGATTT 548 ||||| |||| | |||| |||||| |||| ||| | |||| | | || | || Sbjct 7296110 TGGGATACCCTAGTGGGTTGCACCACCGACTGATTAACCTTGATCTTCTAAGAAGAGTTC 7296051 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAAC--TATGCCTGAATAGGGTGA 606 |||| ||||||| ||| | ||||||||||||||||||| ||||||||| | | || Sbjct 7296050 GAGTTTGAGCATACTTGTCGAGACCCGAAAGATGGTGAACTATATGCCTGAGCGGAGCGA 7295991 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT-TCTGGCGTGCAAATCGATCGTCAA 665 || ||| |||||||| |||||||| | || | | | || || |||||| |||| Sbjct 7295990 AGGAAGATGAAACTCTAGTGGAGGCCCATAGAGATATTTGACGGGCAAATAATTCGTTTG 7295931 Query 666 ATTTGGGTATAGGGGCGA 683 | |||| ||||||||||| Sbjct 7295930 ACTTGGATATAGGGGCGA 7295913 >seq2 Length=23174626 Score = 91.5 bits (100), Expect = 6e-16 Identities = 128/174 (74%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 19247637 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 19247578 Query 464 AACCCGT-GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGG-TGCACCATCG 520 ||||||| ||| || ||| ||| ||||||| ||| | | ||| ||||||| || Sbjct 19247577 AACCCGTAAGGCGCAAGGAAGCTGA---CTGGTGGGATCCCCTAGTGGGTTGCACCACCG 19247521 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCC 574 ||||| | |||| | | || || || |||| |||||| |||| ||||||| Sbjct 19247520 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCC 19247467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079995924500