Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq190 230 6e-58 seq187 203 8e-50 seq5 141 2e-31 >seq190 Length=155293 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 102664 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 102723 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 102724 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 102783 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 102784 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 102843 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 102844 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 102903 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 102904 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 102963 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 102964 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 103023 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 103024 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 103072 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 139245 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 139186 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 139185 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 139126 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 139125 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 139066 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 139065 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 139006 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 139005 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 138946 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 138945 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 138886 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 138885 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 138837 >seq187 Length=1555935 Score = 203 bits (224), Expect = 8e-50 Identities = 246/335 (73%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 661474 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 661533 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||| ||| |||||| | |||||||||||||| | ||| || | | | || | | || Sbjct 661534 AAGCCTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTCAGTCCGCCGT 661593 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 661594 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 661653 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||| ||||| || Sbjct 661654 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAAGACCAACGG 661713 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| || ||||| ||||||| || | |||||||| ||||||| || | Sbjct 661714 CGAAAGCACTCCGCTGGGCCGACACTGAGACTGAGAGACGAAAGCTAGGGGAGCGAATGG 661773 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||| ||||||| ||| |||||||| Sbjct 661774 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGAT 661808 Score = 192 bits (212), Expect = 2e-46 Identities = 245/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 167502 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 167561 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 167562 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 167618 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 167619 AAGTCGC---CAAAAACTGGTGGAATGCTCTCGAAACCCATTCACTTGAGTGAGACAGAG 167675 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | ||||| |||| || Sbjct 167676 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAAGGCCAAAAGC 167735 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 167736 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGG 167795 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 167796 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 167829 Score = 192 bits (212), Expect = 2e-46 Identities = 245/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 918457 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 918516 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 918517 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 918573 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 918574 AAGTCGC---CAAAAACTGGTGGAATGCTCTCGAAACCCATTCACTTGAGTGAGACAGAG 918630 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | ||||| |||| || Sbjct 918631 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAAGGCCAAAAGC 918690 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 918691 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGG 918750 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 918751 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 918784 >seq5 Length=28023477 Score = 141 bits (156), Expect = 2e-31 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | |||||| ||||||| || |||| | Sbjct 13970361 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTAC 13970420 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | ||||| |||| ||||||||||| | ||||| | || |||||| | |||||| Sbjct 13970421 GAAGGAAGGCCAAAAGCGAAGGCAGCTCTCTGGGTTCCTACCGACGCTGGGGTGCGAAAG 13970480 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||| ||| ||||||||||||||||||||||| ||| |||||||| Sbjct 13970481 CATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 13970531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289597549760