Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq190 338 1e-90 seq187 289 6e-76 seq4 120 6e-25 seq1 100 6e-19 >seq190 Length=155293 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 108056 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 107997 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107996 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 107937 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 107936 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 107877 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 107876 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 107817 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 107816 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 107757 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 107756 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 107705 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 133850 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 133909 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133910 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 133969 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 133970 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 134029 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 134030 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 134089 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 134090 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 134149 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 134150 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 134201 >seq187 Length=1555935 Score = 289 bits (320), Expect = 6e-76 Identities = 284/365 (78%), Gaps = 25/365 (7%) Strand=Plus/Minus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| | || | ||||||||||| || | ||||||||||||| ||| ||| Sbjct 460884 CATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCCTTA 460825 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC------TTAGGAC 121 |||||||||||||||||||||||||||||||||||||||| |||||| | |||| Sbjct 460824 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTAGCTACCGCTCCGTGGGGAC 460765 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 |||||||||||||||||||||| || ||||||| || | ||| | | | | || Sbjct 460764 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTC---ATCA 460708 Query 182 GATCCC-------CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234 | || | ||| ||||||| |||| |||||||||||||| || |||||| ||||| Sbjct 460707 GGTCACCAACTTTCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTT 460648 Query 235 GCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTC--TCTGCGG 292 |||||| || || ||||||||||||||||||||||||| |||||| || || | Sbjct 460647 ACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCAAGCTTCCC 460588 Query 293 CCTG-----TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 | || |||| | |||||||||||||||| ||||||||||| ||||||||||||| Sbjct 460587 CTTGTGTACTCATGG--AGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTT 460530 Query 348 CCTTA 352 ||||| Sbjct 460529 CCTTA 460525 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 833860 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 833919 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 833920 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 833979 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 833980 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 834031 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 834032 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 834091 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 834092 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 834151 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 834152 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 834211 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 834212 CTTCGACATGGTTCTC 834227 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 1062102 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1062161 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 1062162 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1062221 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 1062222 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 1062273 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 1062274 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 1062333 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 1062334 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 1062393 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1062394 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 1062453 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 1062454 CTTCGACATGGTTCTC 1062469 >seq4 Length=23425844 Score = 120 bits (132), Expect = 6e-25 Identities = 128/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||| | |||| | || ||||||| || |||||| ||||| |||||| || | Sbjct 15979420 CCTTGACCTTTCGGCACTAGATAGACGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 15979479 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC--TGTCATAGAC 304 | ||||||||||||||||||||||| | |||| || ||||| || | | | Sbjct 15979480 AGACCTGTGTTTTTGGTAAACAGTCACCCAAGCCTGGTCACTGCGACCCTTTTTGTGAGG 15979539 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||||||| || |||||||| || |||||| | ||||||||| Sbjct 15979540 AGGCACCCCTTCTTCCAAAGTTACGAGGCTATTTTGTCAAGTTCCTTA 15979587 >seq1 Length=29149675 Score = 100 bits (110), Expect = 6e-19 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||| |||| || | |||||| |||| | ||| ||||||||||| ||| || | Sbjct 16356664 ATTTCATCGAGCCTTTCTATGAGACGATGCCTAGATCATTACGCCTTTCATGCATGTTGA 16356723 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| |||||||||||||| | || |||| || |||||||||||| | | | |||| Sbjct 16356724 AACTTATCCGACAAGGAATTTTGTTATCTTAAGATTGTTATAGTTACGACTGTCATTTAT 16356783 Query 147 TGGGGCTT 154 || ||||| Sbjct 16356784 TGAGGCTT 16356791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062397981440